View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_128 (Length: 252)
Name: NF0547_low_128
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_128 |
 | |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36033839 - 36033597
Alignment:
| Q |
1 |
atgattgcggtcgtcgcggtgcgaattaatcacaacatcacacaattaccctcaccccactttattctttccaggttctacttactcacttctttttcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36033839 |
atgattgcggtcgtcgcggtgcgaattaatcacaacatcacacaattaccctcaccccactttattctttccaggttctacttactcacttctttttcaa |
36033740 |
T |
|
| Q |
101 |
tgtcacattactgaagcaagcaaccgcgaattcataaacacaaaaatctcatctctatagtccaaactcacaaccatattcacacaaagacacactcaac |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36033739 |
tgtcacattactgaagcaagcaaccacgaattcataaacacaaaaatctcatctctatagtccgaactcacaaccatattcacacaaagacacactcaac |
36033640 |
T |
|
| Q |
201 |
tcaatgttccaacnnnnnnnnctctctaaaatctcattcatct |
243 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |
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| T |
36033639 |
tcaatgttccaacttttttttctctctaaaatctcattcatct |
36033597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 27983600 - 27983779
Alignment:
| Q |
60 |
ctttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaa-cacaaaaat-ctcatctcta |
157 |
Q |
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||||||||||| |||||| ||||| || ||| ||||| ||||||||||||| |||||||||||||| |||| ||||||| ||| ||| | |||||||||| |
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| T |
27983600 |
ctttattctttgcaggttttactttcttact-cttttccaatgtcacattattgaagcaagcaaccacgaactcataaatcactaaagttctcatctcta |
27983698 |
T |
|
| Q |
158 |
tagtccaaactcacaaccatattcacacaaagacacactcaactcaatgttccaacnnnnnnnnctctctaaaatctcatt |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
27983699 |
aagtccaaactcacaaccatattcacacaaagacacactcaactcaaagttccaacttttttttctctctaaaatctcatt |
27983779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 32953715 - 32953564
Alignment:
| Q |
51 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaaca-caaaaatct |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| || |||| |||||||| |||||||||||||| ||||||||| |
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| T |
32953715 |
ctcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaacaacgaattcataaacaccaaaaatct |
32953616 |
T |
|
| Q |
150 |
catctctatagtccaaactcacaacc--atattcacacaaagacacactcaa |
199 |
Q |
| |
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|||||||||||||| ||||||||||| |||||| |||||||||| |||||| |
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|
| T |
32953615 |
catctctatagtccgaactcacaaccatatattcgcacaaagacaaactcaa |
32953564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 3722487 - 3722628
Alignment:
| Q |
51 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaac--acaaaaatc |
148 |
Q |
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|
|||||| ||| ||||||||| ||||||| ||| |||||||||||| ||||||||| ||| ||| | | |||| | ||||||||||| | ||||||| |
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| T |
3722487 |
ctcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccgaattatggaaccactaattcataaacataaaaaaatc |
3722586 |
T |
|
| Q |
149 |
tcatctctatagtccaaact--cacaaccatattcacacaaa |
188 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||| |
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| T |
3722587 |
tcatctctaaagtccaaactaacacaaccatattcacacaaa |
3722628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 7805603 - 7805725
Alignment:
| Q |
51 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaaca-caaaaatct |
149 |
Q |
| |
|
|||||| ||||||||| |||| ||||||| ||| | ||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
7805603 |
ctcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaactacgaattcataaacaccaaaaatcc |
7805702 |
T |
|
| Q |
150 |
catctctatagtccaaactcaca |
172 |
Q |
| |
|
|||||||| |||||||||||||| |
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| T |
7805703 |
catctctaaagtccaaactcaca |
7805725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 35739762 - 35739655
Alignment:
| Q |
88 |
acttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaacacaaaaa-tctcatctctatagtccaaact--cacaaccatattcaca |
184 |
Q |
| |
|
||||||||| |||||||||| ||||||||| | |||| | |||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
35739762 |
acttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaagtccaaactcacacaaccatattcaca |
35739663 |
T |
|
| Q |
185 |
caaagaca |
192 |
Q |
| |
|
|||||||| |
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|
| T |
35739662 |
caaagaca |
35739655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 37080806 - 37080881
Alignment:
| Q |
88 |
acttctttttcaatgtcacattactgaagcaagcaaccgcgaattcataaaca-caaaaatctcatctctatagtc |
162 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||| | |||||||||||| ||| ||||||||||||| |||| |
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| T |
37080806 |
acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaagtc |
37080881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 13402262 - 13402220
Alignment:
| Q |
3 |
gattgcggtcgtcgcggtgcgaattaatcacaacatcacacaa |
45 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||||| |
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|
| T |
13402262 |
gattgcggttgtcgcggtgtgaattaatcacaacattacacaa |
13402220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 228794 - 228978
Alignment:
| Q |
4 |
attgcggtcgtcgcggtgcgaattaatcacaacatcacacaattaccctcaccc----cactttattctttccaggttctacttactcacttctttttca |
99 |
Q |
| |
|
|||||| | ||||| ||| |||||||||| || | |||||||||||||||| | ||||||| ||||||||| |||| | |||| ||||||| || |
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|
| T |
228794 |
attgcgattgtcgcagtgtgaattaatcaaaattttacacaattaccctcactcacctcactttactctttccagattct---ttctcatttcttttcca |
228890 |
T |
|
| Q |
100 |
atgtcacattactgaagcaagcaaccgcgaattcataaaca-caaaaatctcatctctatagtccaaact--cacaaccatattcaca |
184 |
Q |
| |
|
||||||| |||| |||||||||||| || ||||||||||| |||| |||||||||||| ||||| |||| |||||||||||||||| |
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|
| T |
228891 |
atgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaagtccgaactcacacaaccatattcaca |
228978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 29521797 - 29521878
Alignment:
| Q |
112 |
tgaagcaagcaaccgcgaattcataaacac-aaaaatctcatctctatagtccaaactcacaaccatattcacacaaagaca |
192 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||||||||||| | |||| ||||||||||| |||| ||||||||| |
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|
| T |
29521797 |
tgaagcaaggaaccatgaattcataaacatgaaaaatctcatctctaaaacccaagctcacaaccatcttcatacaaagaca |
29521878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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