View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_13 (Length: 552)
Name: NF0547_low_13
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 15115798 - 15115286
Alignment:
| Q |
11 |
cataggtgtaatcatattcgtaatcgttgcagggttttctcatgcaaatacatcaaacttgacaccttttttaccttatggagttaaaggtgtatttcaa |
110 |
Q |
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| T |
15115798 |
cataggtgtaatcatattcgtaatcgttgcaggattttctcatgcaaatacatcaaacttgacaccttttttaccttatggagttaaaggtgtatttcaa |
15115699 |
T |
|
| Q |
111 |
gcatctgcaattctatattttgcatatggagggtttgacagtcttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115698 |
gcatctgcaattctatattttgcatatggagggtttgacagtcttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttga |
15115599 |
T |
|
| Q |
211 |
ttggttcaatgtctgtgatcacagttatctattgcttgatggcactttcactaagcatgatgcagaaatacacagatatagatacaggtgcagctttctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115598 |
ttggttcaatgtctgtgatcacagttatctattgcttgatggcactttcactaagcatgatgcagaaatacacagatatagatacaggtgcagctttctc |
15115499 |
T |
|
| Q |
311 |
agttgcatttcagaaagttggaatgaattgggcaaaatatgtagtagcttttggtgcattgaaaggtatgacaacagtgcttttagtaggaagattagga |
410 |
Q |
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| T |
15115498 |
agttgcatttcagaaagttggaatgaattgggcaaaatatgtagtagcttttggtgcattgaaaggtatgacaacagtgcttttagtaggaagattagga |
15115399 |
T |
|
| Q |
411 |
caagcgcgttatattgctcacatcgcacgttcgcacatgattcctccttggttcgctcttgtacatccgaaaactggaacgcctataaatgctacacttc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115398 |
caagcgcgttatattgctcacatcgcacgttcgcacatgattcctccttggttcgctcttgtacatccgaaaactggaacgcctataaatgctacacttc |
15115299 |
T |
|
| Q |
511 |
tgattacaatttc |
523 |
Q |
| |
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||||||||||||| |
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| T |
15115298 |
tgattacaatttc |
15115286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 21597381 - 21597281
Alignment:
| Q |
154 |
ttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttgattggttcaatgtctgtgatcacagttatctattgcttgatggc |
253 |
Q |
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||||||| |||||||||||||||||||| || | | || ||||| || || || ||||||||||||||| ||||||| ||||| ||||| |||||||| |
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| T |
21597381 |
ttgcaactatggctgaagaaactaaaaacccttctagagatatacctattggtttaattggttcaatgtctatgatcacggttatttattgtttgatggc |
21597282 |
T |
|
| Q |
254 |
a |
254 |
Q |
| |
|
| |
|
|
| T |
21597281 |
a |
21597281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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