View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_130 (Length: 251)

Name: NF0547_low_130
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_130
NF0547_low_130
[»] chr1 (10 HSPs)
chr1 (73-245)||(44999315-44999498)
chr1 (78-180)||(48527690-48527790)
chr1 (60-180)||(16964967-16965085)
chr1 (67-191)||(35943295-35943418)
chr1 (145-180)||(9482611-9482646)
chr1 (125-180)||(12665946-12666001)
chr1 (77-167)||(5612943-5613032)
chr1 (119-167)||(13894782-13894830)
chr1 (194-242)||(15072775-15072823)
chr1 (213-245)||(27814372-27814404)
[»] chr5 (12 HSPs)
chr5 (60-191)||(30859011-30859141)
chr5 (75-189)||(1102765-1102877)
chr5 (60-155)||(36898819-36898916)
chr5 (60-180)||(22047890-22048010)
chr5 (60-180)||(22308640-22308759)
chr5 (60-191)||(30910888-30911017)
chr5 (119-191)||(11262538-11262610)
chr5 (60-186)||(4127089-4127219)
chr5 (60-179)||(9220300-9220416)
chr5 (60-180)||(13520640-13520759)
chr5 (61-141)||(33172743-33172823)
chr5 (195-239)||(33173946-33173990)
[»] chr3 (15 HSPs)
chr3 (60-191)||(35371053-35371183)
chr3 (60-180)||(26886429-26886547)
chr3 (60-180)||(41264494-41264612)
chr3 (126-191)||(14745106-14745171)
chr3 (96-180)||(42685032-42685115)
chr3 (60-191)||(3208630-3208759)
chr3 (60-105)||(27841549-27841594)
chr3 (60-180)||(34819126-34819244)
chr3 (99-167)||(20314644-20314711)
chr3 (60-167)||(46368977-46369081)
chr3 (126-180)||(48083383-48083437)
chr3 (196-245)||(50810821-50810870)
chr3 (196-245)||(50864994-50865043)
chr3 (66-167)||(53624210-53624309)
chr3 (79-167)||(37415164-37415252)
[»] chr8 (11 HSPs)
chr8 (60-188)||(32695116-32695241)
chr8 (60-189)||(17455194-17455321)
chr8 (70-180)||(20180525-20180634)
chr8 (60-191)||(24192504-24192634)
chr8 (76-176)||(6397942-6398041)
chr8 (125-180)||(32798436-32798491)
chr8 (76-191)||(42870960-42871074)
chr8 (75-180)||(31845652-31845755)
chr8 (119-180)||(9854778-9854839)
chr8 (126-167)||(44076267-44076308)
chr8 (61-148)||(8571457-8571544)
[»] chr7 (13 HSPs)
chr7 (60-191)||(32255136-32255264)
chr7 (70-180)||(44372885-44372994)
chr7 (70-180)||(44381741-44381850)
chr7 (60-167)||(22537729-22537832)
chr7 (60-180)||(13564080-13564198)
chr7 (75-167)||(48312209-48312300)
chr7 (126-191)||(35295844-35295909)
chr7 (125-180)||(43460727-43460782)
chr7 (76-167)||(16756040-16756128)
chr7 (75-180)||(43441502-43441605)
chr7 (76-167)||(47059278-47059371)
chr7 (77-167)||(47060334-47060423)
chr7 (60-105)||(46835906-46835951)
[»] chr4 (16 HSPs)
chr4 (60-180)||(44498617-44498736)
chr4 (60-191)||(2312323-2312451)
chr4 (60-189)||(7707737-7707864)
chr4 (76-180)||(56085503-56085605)
chr4 (75-180)||(36845566-36845669)
chr4 (75-167)||(38555134-38555226)
chr4 (97-191)||(1794558-1794651)
chr4 (75-167)||(1519979-1520070)
chr4 (119-191)||(13165640-13165712)
chr4 (99-191)||(27850816-27850908)
chr4 (60-167)||(19750135-19750241)
chr4 (60-167)||(19789565-19789671)
chr4 (75-180)||(26629946-26630049)
chr4 (135-192)||(11968656-11968713)
chr4 (75-180)||(52138648-52138753)
chr4 (60-108)||(23202075-23202123)
[»] chr6 (8 HSPs)
chr6 (61-180)||(29381572-29381689)
chr6 (60-180)||(18346592-18346709)
chr6 (61-180)||(17837773-17837890)
chr6 (76-176)||(23392375-23392475)
chr6 (196-245)||(232254-232303)
chr6 (118-175)||(7312182-7312238)
chr6 (128-180)||(7311632-7311684)
chr6 (75-167)||(11722955-11723046)
[»] chr2 (9 HSPs)
chr2 (60-191)||(18616846-18616975)
chr2 (192-245)||(12359662-12359715)
chr2 (60-191)||(29219532-29219660)
chr2 (60-191)||(29332831-29332959)
chr2 (61-180)||(34467662-34467782)
chr2 (66-133)||(7436668-7436735)
chr2 (118-180)||(42641758-42641820)
chr2 (79-180)||(8320913-8321013)
chr2 (128-180)||(32469306-32469358)
[»] scaffold2071 (1 HSPs)
scaffold2071 (97-192)||(559-653)
[»] scaffold0118 (1 HSPs)
scaffold0118 (60-191)||(43416-43544)
[»] scaffold0077 (1 HSPs)
scaffold0077 (60-191)||(54025-54154)
[»] scaffold0031 (1 HSPs)
scaffold0031 (97-192)||(125108-125203)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 44999315 - 44999498
Alignment:
Q  73 atcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaac 172  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44999315 atcgtaagatataatagacttgcgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggtgaac 44999414  T
Q  173 cactcttacgattggtcca-----------taaggttaaagttaacagctagggatttatttggcaaacataggaaaaaatgag 245  Q
    |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44999415 cactcttacgattggtccaccatagacatttaaggttaaagttaacagctagggatttatttggcaaacagaggaaaaaatgag 44999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 48527790 - 48527690
Alignment:
Q  78 aagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactc 177  Q
    |||||| |||| |||||  |||||||||||||||| ||| ||||||  ||||||||  |||||| ||||||||||| ||||||||||||| | |||||||    
T  48527790 aagataaaatacacttgcataatccaatggtcatcatttaaaaaaa--agatcaaacagtttaaattaaaataattgataagatctatggtggaccactc 48527693  T
Q  178 tta 180  Q
    |||    
T  48527692 tta 48527690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 16964967 - 16965085
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||| ||| ||||||| || ||||| |||||||  ||||||  ||||  || | |||| |||| || ||||||||||||||| |    
T  16964967 gtgttggtggtacatcgtaatataaaatagacctgcgtaatacaatggttctctttt--aaaagaaaaaacaaacggttgaaattaaaataattaatagg 16965064  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| | ||||||||||    
T  16965065 atctatggtggaccactctta 16965085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 35943295 - 35943418
Alignment:
Q  67 tggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatgg-tttaagttaaaataattaataagatctat 165  Q
    |||| |||||||||||| ||||||| || ||||| ||||||||||| ||| |||||  ||||||||| || |||||  ||||| | |||||||| |||||    
T  35943295 tggttcatcgtaagataaaatagacctgcgtaattcaatggtcatcctttcaaaaa--aagatcaaacggttttaaaataaaaaatttaataaggtctat 35943392  T
Q  166 ggagaaccactcttacgattggtcca 191  Q
    || | | |||||||| | ||||||||    
T  35943393 ggtggatcactcttaaggttggtcca 35943418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 180
Target Start/End: Complemental strand, 9482646 - 9482611
Alignment:
Q  145 aaaataattaataagatctatggagaaccactctta 180  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9482646 aaaataattaataagatctatggtgaaccactctta 9482611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 12666001 - 12665946
Alignment:
Q  125 aagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||||||| ||||||| |||| | |||||||||||||||||| | ||||||||||    
T  12666001 aagatcaaacggtttaaattaacaaaattaataagatctatggtggaccactctta 12665946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 5612943 - 5613032
Alignment:
Q  77 taagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||| |||| ||||  |||||| |||||||||| ||| |||||   | |||||| ||||||| ||||||||||||||| |||||||||    
T  5612943 taagataaaatacacttacgtaatctaatggtcatccttttaaaaatata-atcaaacggtttaaattaaaataattaataggatctatgg 5613032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 13894830 - 13894782
Alignment:
Q  119 aaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||| ||||||||| ||||||| ||||||||||||| | |||||||||    
T  13894830 aaaaaaaagatcaaacggtttaaattaaaataattaacaggatctatgg 13894782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 15072775 - 15072823
Alignment:
Q  194 aggttaaagttaacagctagggatttatttggcaaacataggaaaaaat 242  Q
    ||||||||||||||||  | |||||||||||||||||  ||||||||||    
T  15072775 aggttaaagttaacagacatggatttatttggcaaacggaggaaaaaat 15072823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 27814404 - 27814372
Alignment:
Q  213 gggatttatttggcaaacataggaaaaaatgag 245  Q
    ||||||||||||||||||| |||||||||||||    
T  27814404 gggatttatttggcaaacagaggaaaaaatgag 27814372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 30859011 - 30859141
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||| || |||||||| ||||||||||| ||||||||||||  |||||| |||||  || |||||| ||||||| ||||||||||||||| |    
T  30859011 gtgttggtggtatattgtaagataaaatagacttgtctaatccaatggttctctttttaaaaagaaa-atcaaacggtttaaattaaaataattaatagg 30859109  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| ||||||||||    
T  30859110 atctatggtggaccactcttaagattggtcca 30859141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 1102877 - 1102765
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| |||||  ||||||| |||||||| ||| ||||||  |||||||| ||||||| ||||||||||||||||||||||||| | ||||    
T  1102877 cgtaagataaaatacacttgcataatccactggtcatcatttaaaaaaa--agatcaaacggtttaaattaaaataattaataagatctatggtggacca 1102780  T
Q  175 ctcttacgattggtc 189  Q
    |||||| | ||||||    
T  1102779 ctcttaaggttggtc 1102765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 36898819 - 36898916
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatctttt-gaa-aaaacaagatcaaatggtttaagttaaaataattaa 155  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||| |||| || |||||| |||||||  ||||||||||||    
T  36898819 gtgttggtggtacatcgtaagataaaatagacatgcgtaatccaatggtcatcttttagaagaaaaaaaaatcaaagggtttaaactaaaataattaa 36898916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 22048010 - 22047890
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| |||||||| |||||||| ||||||| | | |||| |||||||  |||||| |||||| || |||||| ||||||| ||||||||||| ||| |    
T  22048010 gtgttgatggtacattgtaagataaaatagacctttctaattcaatggttctcttttcaaaaaaaaaaatcaaacggtttaaattaaaataattcatagg 22047911  T
Q  160 atctatggagaaccactctta 180  Q
    || ||||| | ||||||||||    
T  22047910 atttatggtggaccactctta 22047890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 22308640 - 22308759
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| ||||||| ||||||  | ||||||| ||  |||||||||||||||||||| ||||||| |||||||||||||||  |||||| | |||||||     
T  22308640 gtgttgttggtacaccgtaagtaacaatagacatgcataatccaatggtcatctttttaaaaaac-agatcaaatggtttacattaaaaaatttaataat 22308738  T
Q  160 atctatggagaaccactctta 180  Q
     ||||||| | ||||||||||    
T  22308739 gtctatggtggaccactctta 22308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 30911017 - 30910888
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| ||  |||| |||||||  |||||| || ||| |   ||||| |||| || ||||||||||||||| |    
T  30911017 gtgttggtggtacatcgtaagataaaatagacatgcctaattcaatggttctcttttaaagaaaaac--tcaaacggttgaaattaaaataattaatagg 30910920  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| | ||||||||    
T  30910919 atctatggtggaccactcttaaggttggtcca 30910888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 11262610 - 11262538
Alignment:
Q  119 aaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    ||||| ||||||||||||||||| ||| ||||||||||| ||||||||| | |||||||||| | ||||||||    
T  11262610 aaaaaaaagatcaaatggtttaaattataataattaataggatctatggtggaccactcttaaggttggtcca 11262538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 4127089 - 4127219
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatctttt----gaaaaaacaagatcaaatggtttaagttaaaataattaa 155  Q
    |||||||||||||||| ||||||| ||||||| |||| |||| ||||||  ||||||     |||||  || |||||||||||||| ||||| |||||||    
T  4127089 gtgttggtggtacatcataagataaaatagacctgtgcaatctaatggttctcttttacaaaaaaaataaaaatcaaatggtttaaattaaattaattaa 4127188  T
Q  156 taagatctatggagaaccactcttacgattg 186  Q
     | ||||||||| | |||||| ||| |||||    
T  4127189 caggatctatggtggaccacttttaagattg 4127219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 9220300 - 9220416
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||  ||||||||| | || ||||||| |||||||||||| |||| |||||| |  ||| |   ||||| ||||||| |||||||||||||||||    
T  9220300 gtgttggtaatacatcgtatggtaaaatagacatgtgtaatccaacggtcgtcttttaaggaaaaa---tcaaacggtttaaattaaaataattaataag 9220396  T
Q  160 atctatggagaaccactctt 179  Q
    || ||||| | |||||||||    
T  9220397 atttatgggggaccactctt 9220416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 13520640 - 13520759
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||| |||||| ||||||| ||||||| |  ||||||||| |||  |||||| | |||| || ||| ||  |||||| | ||| ||||||||| |    
T  13520640 gtgttggtgatacatcataagataaaatagaccttcgtaatccaacggttctctttttataaaaaaa-atccaacagtttaaatcaaattaattaatagg 13520738  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| ||||||||||||    
T  13520739 atctatggtgaaccactctta 13520759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 33172823 - 33172743
Alignment:
Q  61 tgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaa 141  Q
    ||||| ||||||| |||||| || |||||||  |  ||||| |||||||||||||| ||||||  |||||||| |||||||    
T  33172823 tgttgttggtacaccgtaagttaaaatagacacgcataatctaatggtcatcttttaaaaaaaatagatcaaacggtttaa 33172743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 33173946 - 33173990
Alignment:
Q  195 ggttaaagttaacagctagggatttatttggcaaacataggaaaa 239  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||    
T  33173946 ggttaaacttaacagccaaggatttatttggcaaacagaggaaaa 33173990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 35371183 - 35371053
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||  |||||| |||||| || ||||||  ||| || ||||||||||||||| |    
T  35371183 gtgttggtggtacatcgtaagataaaatagacttgcctaatccaatggttctctttttaaaaaa-aaaatcaaaaagttaaaattaaaataattaatagg 35371085  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| | ||||||||    
T  35371084 atctatggtggaccactcttaaggttggtcca 35371053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 26886547 - 26886429
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| ||  ||||||||||||   |||||  ||||| || |||||| ||||||| ||||||||||||||| |    
T  26886547 gtgttggtggtacatcgtaagataaaatagacatgcataatccaatggttccctttt--aaaaaaaaaatcaaacggtttaaattaaaataattaatagg 26886450  T
Q  160 atctatggagaaccactctta 180  Q
    || ||||| | ||||||||||    
T  26886449 atttatggtggaccactctta 26886429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 41264494 - 41264612
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| ||  |||| |||||||  |||||| |||||  || |||||| |||  || ||||||||||||||| |    
T  41264494 gtgttggtggtacatcgtaagataaaatagacctgcttaattcaatggttctctttttaaaaa--aaaatcaaacggtcgaaattaaaataattaatagg 41264591  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| | ||||||||||    
T  41264592 atctatggtgtaccactctta 41264612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 14745106 - 14745171
Alignment:
Q  126 agatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    ||||||||  |||||| ||||||||||||||| ||||||||| |||||||||||| | ||||||||    
T  14745106 agatcaaacagtttaaattaaaataattaataggatctatggtgaaccactcttaaggttggtcca 14745171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 42685115 - 42685032
Alignment:
Q  96 gtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||| ||||||||||||||| ||||||| |||||||| ||||||| |||||| | |||||||| | ||||| | ||||||||||    
T  42685115 gtaattcaatggtcatctttttaaaaaac-agatcaaacggtttaaattaaaaaatttaataaggtttatggtggaccactctta 42685032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 3208759 - 3208630
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| ||||||||||||||||| | ||||||||  | ||||||||||  | ||||  ||||| || |||||| ||||||| ||| ||||||||||| |    
T  3208759 gtgttgatggtacatcgtaagataaattagacttgcct-atccaatggttctatttt-taaaaataaaatcaaacggtttaaattataataattaatagg 3208662  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    || ||||| | |||||||||| | ||||||||    
T  3208661 atttatggtggaccactcttaaggttggtcca 3208630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 27841549 - 27841594
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaat 105  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||    
T  27841549 gtgttggtggtacatcgtaagataaaatagacttgcctaatccaat 27841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 34819126 - 34819244
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||| | ||||||| ||||||||||  ||||||||||||  ||||||   | || || | ||||  |||||| ||||||||| ||||| |    
T  34819126 gtgttggtggtacaccataagataaaatagacttgcctaatccaatggt--tctttttttataaaaaaaacaaacagtttaaattaaaataagtaatagg 34819223  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| | ||||||||||    
T  34819224 atctatggtggaccactctta 34819244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 20314644 - 20314711
Alignment:
Q  99 atccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    |||||| |||| ||||||||||||| || |||||||||||||| |||||  |||||||||| |||||||    
T  20314644 atccaacggtcctcttttgaaaaaataa-atcaaatggtttaaattaaataaattaataaggtctatgg 20314711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 46369081 - 46368977
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||  | ||||||| ||||||  ||| || |||||| |  || ||||| ||||| ||||||||||||||| |    
T  46369081 gtgttggtggtacatcgtaagataaaatagatatttgtaatctaatggttctctctt-aaaaaata--ataaaatgatttaaattaaaataattaatatg 46368985  T
Q  160 atctatgg 167  Q
    || |||||    
T  46368984 atatatgg 46368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 48083437 - 48083383
Alignment:
Q  126 agatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||| |||||||||| ||||||||||||||| |||||||||   ||||||||||    
T  48083437 agatcgaatggtttaaattaaaataattaataggatctatggtagaccactctta 48083383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 50810821 - 50810870
Alignment:
Q  196 gttaaagttaacagctagggatttatttggcaaacataggaaaaaatgag 245  Q
    |||||||||||||| | | ||||||||||||||||  |||||||||||||    
T  50810821 gttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgag 50810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 50865043 - 50864994
Alignment:
Q  196 gttaaagttaacagctagggatttatttggcaaacataggaaaaaatgag 245  Q
    |||||||||||||| | | ||||||||||||||||  |||||||||||||    
T  50865043 gttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgag 50864994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 53624210 - 53624309
Alignment:
Q  66 gtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctat 165  Q
    |||||||||||||||||| |||||||  ||||||||||| |||  |||||   ||||| ||||||||| |||| || || ||| |||||||||| |||||    
T  53624210 gtggtacatcgtaagataaaatagacacgtgtaatccaacggttctctttcttaaaaa-aagatcaaaaggttaaaattgaaa-aattaataaggtctat 53624307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 37415252 - 37415164
Alignment:
Q  79 agatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||| |||| || |||||||| |||||||| |||||| |||||| |  ||  || |||| || |||||| ||||||||||||||||||    
T  37415252 agataaaataaacatgtgtaattcaatggtcctcttttaaaaaaaaacaatttaacggttaaaattaaaagaattaataagatctatgg 37415164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 32695116 - 32695241
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||||  ||||||   |||| || |||||| ||||||| ||||||||||||||| |    
T  32695116 gtgttggtggtatatcgtaagataaaatagacttgtctaatccaatggttctctttt---aaaaaaaaatcaaacggtttaaattaaaataattaatagg 32695212  T
Q  160 atctatggagaaccactcttacgattggt 188  Q
    |||||||| | |||| ||||| |||||||    
T  32695213 atctatggtggaccaatcttaagattggt 32695241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 17455321 - 17455194
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||| |||||||||||||||||| ||||||| || |||||| ||||||| ||||||  |||||  |||| ||| |||| || |||||||||||||||||    
T  17455321 gtgttagtggtacatcgtaagataaaatagacctgcgtaatctaatggtcctctttt--aaaaaatagataaaacggttcaaattaaaataattaataag 17455224  T
Q  160 atctatggagaaccactcttacgattggtc 189  Q
    |||||||| | |||||| ||| ||||||||    
T  17455223 atctatggtggaccacttttaagattggtc 17455194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 20180525 - 20180634
Alignment:
Q  70 tacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggag 169  Q
    |||||| ||||||| ||||||| ||||||||| ||||||| |||||| | |||| ||||||||| ||||| | ||||||||||||||| ||||||||| |    
T  20180525 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaa-aagatcaaacggttttaattaaaataattaataggatctatggtg 20180623  T
Q  170 aaccactctta 180  Q
     ||||||||||    
T  20180624 gaccactctta 20180634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 24192504 - 24192634
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||| |||||| ||| ||| ||||||| || |||||| ||||||  |||||| | |||| || |||||| ||||| | ||||||||||||||| |    
T  24192504 gtgttggtgatacatcctaaaataaaatagacatgcgtaatctaatggttctcttttaagaaaaaaa-atcaaacggttttaattaaaataattaatagg 24192602  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| | ||||||||    
T  24192603 atctatggtggaccactcttaaggttggtcca 24192634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 6398041 - 6397942
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccac 175  Q
    |||||||| |||| | |||||||||| |||| ||||| |||  ||||||| ||||||||||||||| |||||| |||||||||| ||||||| | |||||    
T  6398041 gtaagataaaatacatttgtgtaatcaaatgatcatcctttttaaaaaca-gatcaaatggtttaaattaaaaaaattaataaggtctatggtggaccac 6397943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 32798436 - 32798491
Alignment:
Q  125 aagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  32798436 aagatcaaacggtttaaattaaaataattaataggatctatggtggaccactctta 32798491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 42871074 - 42870960
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccac 175  Q
    |||||||| |||| || || ||||| ||||||||||| ||| |||| || |||||||| ||||||| ||| || | |||||||| |||| || | |||||    
T  42871074 gtaagataaaatacacatgcgtaattcaatggtcatccttttaaaacac-agatcaaacggtttaaattacaaaatttaataaggtctacggtggaccac 42870976  T
Q  176 tcttacgattggtcca 191  Q
    ||||| ||||||||||    
T  42870975 tcttaagattggtcca 42870960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 31845652 - 31845755
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| || |  |||||| |||||||||| ||| ||||||  ||||||||  |||||  ||||||||||||||| || |||||| | ||||    
T  31845652 cgtaagataaaatacacctacgtaatctaatggtcatcctttaaaaaaa--agatcaaacagtttacattaaaataattaataggacctatggtggacca 31845749  T
Q  175 ctctta 180  Q
    ||||||    
T  31845750 ctctta 31845755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 9854778 - 9854839
Alignment:
Q  119 aaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||| || |||||||||||||| ||| || |||||||| ||||||||| | ||||||||||    
T  9854778 aaaaaaaaaatcaaatggtttaaattagaagaattaataggatctatggtggaccactctta 9854839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 44076267 - 44076308
Alignment:
Q  126 agatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  44076267 agatcaaatggtttaaattaaaaaaattaataagatttatgg 44076308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 8571457 - 8571544
Alignment:
Q  61 tgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtca-tcttttgaaaaaacaagatcaaatggtttaagttaaaa 148  Q
    ||||| |||||||||||||| || |||||||  || |||||||||||||| |||||| || |||| ||||||||  |||||| ||||||    
T  8571457 tgttgttggtacatcgtaagttacaatagacacgtataatccaatggtcattctttttaagaaac-agatcaaacagtttaaattaaaa 8571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 32255264 - 32255136
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||  ||||||| ||| |||||||||||| |||||||   | || || |||||| |||| || ||||||||||||||| |    
T  32255264 gtgttggtggtacatcgtaagattaaatagacctgtctaatccaatggttatctttt---acaaaaaaatcaaacggttgaaattaaaataattaatagg 32255168  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| | ||||||||    
T  32255167 atctatggtggaccactcttaaggttggtcca 32255136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 44372994 - 44372885
Alignment:
Q  70 tacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggag 169  Q
    |||||| ||||||| ||||||| ||||||||| ||||||| |||||| | |||| ||||||||| ||||| | ||||||||||||||| ||||||||| |    
T  44372994 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaa-aagatcaaacggttttaattaaaataattaataggatctatggtg 44372896  T
Q  170 aaccactctta 180  Q
     ||||||||||    
T  44372895 gaccactctta 44372885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 44381850 - 44381741
Alignment:
Q  70 tacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggag 169  Q
    |||||| ||||||| ||||||| ||||||||| ||||||| |||||| | |||| ||||||||| ||||| | ||||||||||||||| ||||||||| |    
T  44381850 tacatcctaagataaaatagacatgtgtaatctaatggtcctcttttaagaaaa-aagatcaaacggttttaattaaaataattaataggatctatggtg 44381752  T
Q  170 aaccactctta 180  Q
     ||||||||||    
T  44381751 gaccactctta 44381741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 22537832 - 22537729
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||||| |||||||||||| ||||||| ||  ||||||||||||   ||||| ||||||    |||||| ||||||| ||||||||||||||| |    
T  22537832 gtgttggtggttcatcgtaagataaaatagacctgcataatccaatggttcccttttaaaaaaa----atcaaacggtttaaattaaaataattaatagg 22537737  T
Q  160 atctatgg 167  Q
    ||||||||    
T  22537736 atctatgg 22537729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 13564080 - 13564198
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||| ||||||| |||| || ||||||| ||| ||||||||||||  |||||| |||||| |  ||| || |||| || ||||||||||||||| |    
T  13564080 gtgttggtagtacatcataagctaaaatagacatgtctaatccaatggttctctttttaaaaaata--atctaacggttcaaattaaaataattaatagg 13564177  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| | ||||||||||    
T  13564178 atctatggtggaccactctta 13564198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 48312300 - 48312209
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||||| ||||||| || ||||||||||||||||| ||| |||||| |||||||||   ||||| |||||| |||||||| |||||||||    
T  48312300 cgtaagataaaatagacctgcgtaatccaatggtcatccttttaaaaaaaaagatcaaaccatttaaattaaaa-aattaataggatctatgg 48312209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 35295909 - 35295844
Alignment:
Q  126 agatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    |||||||| ||||||| ||||||||||||||| ||||||||| | |||||||||| | ||||||||    
T  35295909 agatcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttggtcca 35295844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 43460727 - 43460782
Alignment:
Q  125 aagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  43460727 aagatcaaagggtttaaattaaaataattaataggatctatggtggaccactctta 43460782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 16756128 - 16756040
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    |||||||| |||| ||||| |||||| ||||||| || ||| |||||| |   |||||||||| || ||||||||||||||| |||||||||    
T  16756128 gtaagataaaatacacttgcgtaatctaatggtcctccttttaaaaaaaa---tcaaatggttaaaattaaaataattaataggatctatgg 16756040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 43441605 - 43441502
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| ||||| |||||||||| |||||| ||| ||||||  | ||||||  |||||  ||||||||||||||| ||  ||||| | ||||    
T  43441605 cgtaagataaaatacacttgcgtaatccaatagtcatcctttaaaaaaa--atatcaaacagtttacattaaaataattaataggacttatggtggacca 43441508  T
Q  175 ctctta 180  Q
    ||||||    
T  43441507 ctctta 43441502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 47059371 - 47059278
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagtt--aaaataattaataagatctatgg 167  Q
    |||||||| |||| || || ||||||||||||||||| ||| ||| ||  |||||||| ||||||| ||  |||| |||||||||| |||||||    
T  47059371 gtaagataaaatacacatgcgtaatccaatggtcatccttttaaataaacagatcaaacggtttaaattaaaaaaaaattaataaggtctatgg 47059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 47060334 - 47060423
Alignment:
Q  77 taagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||| |||| ||||||||||| ||||||||||| ||| ||||||||| |||||| | || || || ||| | |||||||| |||||||    
T  47060334 taagataaaatacacttgtgtaattcaatggtcatccttttaaaaaacaa-atcaaacgattaaattttaaaaatttaataaggtctatgg 47060423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 46835951 - 46835906
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaat 105  Q
    ||||||||||||||||||| |||| ||||||||||| |||| ||||    
T  46835951 gtgttggtggtacatcgtatgataaaatagacttgtctaatacaat 46835906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 44498736 - 44498617
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||| |||||| ||||||| ||||||| || |||||| |||||||||||||| || ||| || |||||| ||||| | ||||||||||||||| |    
T  44498736 gtgttggtgatacatcctaagataaaatagacatgcgtaatctaatggtcatctttt-aagaaaaaaaatcaaacggttttaattaaaataattaatagg 44498638  T
Q  160 atctatggagaaccactctta 180  Q
    |||||||| | ||||||||||    
T  44498637 atctatggtggaccactctta 44498617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 2312323 - 2312451
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||| ||||||| ||||| | ||| ||||||||||||  |||||| ||||   || ||||||  |||||| ||||||||||||||| |    
T  2312323 gtgttggtggtacatcataagataaaataggcctgtctaatccaatggttctctttttaaaa---aaaatcaaacagtttaaattaaaataattaatagg 2312419  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||| ||| ||||||||||    
T  2312420 atctatggtggaccacttttaagattggtcca 2312451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 7707864 - 7707737
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| ||||||||||||||||| ||||||| ||  ||||||||||||  |||||| || ||| ||  ||||| |||| || ||||||||||||||| |    
T  7707864 gtgttgatggtacatcgtaagataaaatagacctgcctaatccaatggttctcttttaaagaaaaaa--tcaaacggttgaaattaaaataattaatagg 7707767  T
Q  160 atctatggagaaccactcttacgattggtc 189  Q
    |||||||| | |||||||||| | ||||||    
T  7707766 atctatggtggaccactcttaaggttggtc 7707737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 56085605 - 56085503
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccac 175  Q
    |||||||| |||| || ||||| |||||| ||||||| ||| |||||| ||  ||||| ||||||| ||||||||||||||| ||||||||| | |||||    
T  56085605 gtaagataaaatacacatgtgtgatccaacggtcatccttttaaaaaaaaa--tcaaacggtttaaattaaaataattaataggatctatggtggaccac 56085508  T
Q  176 tctta 180  Q
    |||||    
T  56085507 tctta 56085503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 36845669 - 36845566
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| || || |||||||||||||||||||||  ||||| || ||||||  |||||  ||||||||||||||| || |||||| | ||||    
T  36845669 cgtaagataaaatacacctgcgtaatccaatggtcatctttt--aaaaaaaatatcaaacagtttacattaaaataattaataggacctatggtggacca 36845572  T
Q  175 ctctta 180  Q
    ||||||    
T  36845571 ctctta 36845566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 38555134 - 38555226
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||||| ||||||| ||||||||||||||||  || ||| || ||| ||||||||| ||||||| |||||| | |||||||  |||||||    
T  38555134 cgtaagataaaatagacatgtgtaatccaatggttctcctttaaataaaaaagatcaaacggtttaaattaaaaaatttaataaagtctatgg 38555226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 1794651 - 1794558
Alignment:
Q  97 taatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    |||| ||||||||||||||| ||||||   ||||||| ||||||| |||||| | |||||||| ||||||| | |||||||||| | ||||||||    
T  1794651 taattcaatggtcatctttttaaaaaa-ttgatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtcca 1794558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 1520070 - 1519979
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||||| |||| ||||  |||||| |||||||||| ||| |||||   | |||||| ||||||| ||||||||||||||| |||||||||    
T  1520070 cgtaagataaaatacacttacgtaatctaatggtcatccttttaaaaatata-atcaaacggtttaaattaaaataattaataggatctatgg 1519979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 13165712 - 13165640
Alignment:
Q  119 aaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    ||||| ||||||||| ||||||| |||||||||||||| |  ||||||| | |||||||||| | ||||||||    
T  13165712 aaaaaaaagatcaaacggtttaaattaaaataattaatgaagtctatggtggaccactcttaaggttggtcca 13165640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 27850816 - 27850908
Alignment:
Q  99 atccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtcca 191  Q
    |||||||| || || ||| |||||| |  |||||| ||||||| ||||||||||||||| ||||||||| | |||||| ||| | ||||||||    
T  27850816 atccaatgatcctcctttaaaaaaaaagaatcaaacggtttaaattaaaataattaataggatctatggtggaccacttttaaggttggtcca 27850908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 19750135 - 19750241
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| |||| |||||||||||| |||| || || || ||||||   || || ||| |||||| ||||||||| | ||||| ||||||||||||||| |    
T  19750135 gtgttgatggttcatcgtaagatagaatacacctgcgtgatccaacaatcctccttttaaaaaa-aagatcaaacgatttaaattaaaataattaatagg 19750233  T
Q  160 atctatgg 167  Q
    ||||||||    
T  19750234 atctatgg 19750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 19789671 - 19789565
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||| |||| |||||||||||| |||| || || || ||||||   || || ||| |||||| ||||||||| | ||||| ||||||||||||||| |    
T  19789671 gtgttgatggttcatcgtaagatagaatacacctgcgtgatccaacaatcctccttttaaaaaa-aagatcaaacgatttaaattaaaataattaatagg 19789573  T
Q  160 atctatgg 167  Q
    ||||||||    
T  19789572 atctatgg 19789565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 26630049 - 26629946
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| || |  |||||| |||||||||| ||| ||||||  ||||||||  |||||  ||||||||||||||| || |||||| | ||||    
T  26630049 cgtaagataaaatacacctacgtaatctaatggtcatcctttaaaaaaa--agatcaaacagtttacattaaaataattaataggacctatggtggacca 26629952  T
Q  175 ctctta 180  Q
    ||||||    
T  26629951 ctctta 26629946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 11968713 - 11968656
Alignment:
Q  135 ggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtccat 192  Q
    ||||||| ||||||||||||||| ||||||||  | |||||||||| | |||||||||    
T  11968713 ggtttaaattaaaataattaataggatctatgatggaccactcttaaggttggtccat 11968656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 52138648 - 52138753
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaacca 174  Q
    ||||||||| |||| || || ||||||||||   | || ||| |||||| || |||||| ||||||| ||| ||||||||||| ||||||||| | ||||    
T  52138648 cgtaagataaaatacacatgcgtaatccaataaccctccttttaaaaaaaaaaatcaaacggtttaaattagaataattaataggatctatggtggacca 52138747  T
Q  175 ctctta 180  Q
     |||||    
T  52138748 ttctta 52138753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 23202123 - 23202075
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggt 108  Q
    |||||||||||||||||||||||| ||||||| ||  |||| |||||||    
T  23202123 gtgttggtggtacatcgtaagataaaatagacctgcttaattcaatggt 23202075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 29381572 - 29381689
Alignment:
Q  61 tgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataaga 160  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||||||| |||||||  ||||  || |||||| |||| || ||||||||||||||| ||    
T  29381572 tgttggtggtacatcgtaagataaaatagacctgcctaatccaatggttatctttttgaaaa--aaaatcaaacggttgaaattaaaataattaatagga 29381669  T
Q  161 tctatggagaaccactctta 180  Q
    ||||||| | | ||||||||    
T  29381670 tctatggtggatcactctta 29381689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 18346592 - 18346709
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||   |||||   |||| || |||||| ||||||| ||||||||||||||| |    
T  18346592 gtgttggtggtacatcgtaagataaaatagacttgcataatccaatggtttactttt---aaaaaaaaatcaaacggtttaaattaaaataattaatagg 18346688  T
Q  160 atctatggagaaccactctta 180  Q
    || ||| | | ||||||||||    
T  18346689 atttatagtggaccactctta 18346709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 17837890 - 17837773
Alignment:
Q  61 tgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataaga 160  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||||||| ||| |||  || |  || |||||| |||| || ||||||||||||||| ||    
T  17837890 tgttggtggtacatcgtaagataaaatagacctgcctaatccaatggttatcgtttttaaga--aaaatcaaacggttgaaattaaaataattaatagga 17837793  T
Q  161 tctatggagaaccactctta 180  Q
    ||||||| | ||||||||||    
T  17837792 tctatggtggaccactctta 17837773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 23392475 - 23392375
Alignment:
Q  76 gtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccac 175  Q
    |||||||| ||||||||||  ||||| |||||| ||||||| |||||| || |||||| |||| || ||||||||||||||| ||||||||| | |||||    
T  23392475 gtaagataaaatagacttgcataatctaatggttatcttttaaaaaaaaaatatcaaacggttgaaattaaaataattaataggatctatggtggaccac 23392376  T
Q  176 t 176  Q
    |    
T  23392375 t 23392375  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 232303 - 232254
Alignment:
Q  196 gttaaagttaacagctagggatttatttggcaaacataggaaaaaatgag 245  Q
    |||||||||||||| | ||||||||||||||||||  |||||||| ||||    
T  232303 gttaaagttaacagtttgggatttatttggcaaacggaggaaaaagtgag 232254  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 7312182 - 7312238
Alignment:
Q  118 aaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccac 175  Q
    |||||| |||||||||||||| || |||||| ||||||||||||||| || |||||||    
T  7312182 aaaaaaaaagatcaaatggttgaaattaaaa-aattaataagatctacggtgaaccac 7312238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 7311632 - 7311684
Alignment:
Q  128 atcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    |||||| ||||||| ||||||||||||||| ||| ||||| | ||||||||||    
T  7311632 atcaaacggtttaaattaaaataattaataggatttatggtggaccactctta 7311684  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 11723046 - 11722955
Alignment:
Q  75 cgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatgg 167  Q
    ||||||| | |||| || ||||||||||||||  | || ||| |||||| || |||||| ||||||| ||| ||||||||||| |||||||||    
T  11723046 cgtaagagaaaatacacctgtgtaatccaatgaccctccttttaaaaaaaaa-atcaaacggtttaaattagaataattaataggatctatgg 11722955  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 18616846 - 18616975
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| | | ||||||||||||  ||||||  ||||  || |||||| |||| || ||||||||||||||| |    
T  18616846 gtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctcttttttaaaa--aaaatcaaacggttgaaattaaaataattaatagg 18616943  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||| ||| || |||||||    
T  18616944 atctatggtggaccacttttaagactggtcca 18616975  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 12359662 - 12359715
Alignment:
Q  192 taaggttaaagttaacagctagggatttatttggcaaacataggaaaaaatgag 245  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  12359662 taaggttaaagttaacagctacggatttatttggcgaacaaaggaaaaaatgag 12359715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 29219660 - 29219532
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| | | ||||||||||||  ||||||        || |||||| |||| || ||||||||||||||| |    
T  29219660 gtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctctttt---tttttaaaatcaaacggttgaaattaaaataattaatagg 29219564  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||| ||| ||||||||||    
T  29219563 atctatggtggaccacttttaagattggtcca 29219532  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 29332959 - 29332831
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||||||||||||||||||||||| ||||||| | | ||||||||||||  ||||||        || |||||| |||| || ||||||||||||||| |    
T  29332959 gtgttggtggtacatcgtaagataaaatagacctatctaatccaatggttctctttt---tttttaaaatcaaacggttgaaattaaaataattaatagg 29332863  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||| ||| ||||||||||    
T  29332862 atctatggtggaccacttttaagattggtcca 29332831  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 34467782 - 34467662
Alignment:
Q  61 tgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatc-ttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||| |||||||||||||| || |||||||   | ||||||| |||||||| |||| |||||| || ||||||  |||||| |||||| | ||||||||    
T  34467782 tgttgttggtacatcgtaagttacaatagacacatataatccagtggtcatcattttaaaaaaaaaatatcaaacagtttaaattaaaaaacttaataag 34467683  T
Q  160 atctatggagaaccactctta 180  Q
     | ||||| | ||||||||||    
T  34467682 gtttatggtggaccactctta 34467662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 7436735 - 7436668
Alignment:
Q  66 gtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaa 133  Q
    |||||||||| ||||||| ||||||  |||||||||||| |||| ||||||  ||||| |||||||||    
T  7436735 gtggtacatcctaagataaaatagatatgtgtaatccaacggtcctcttttttaaaaaaaagatcaaa 7436668  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 42641758 - 42641820
Alignment:
Q  118 aaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    |||||| |||||||||  |||||| ||||||||||||||| |||||||||   ||||||||||    
T  42641758 aaaaaaaaagatcaaacagtttaaattaaaataattaataggatctatggtagaccactctta 42641820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 8321013 - 8320913
Alignment:
Q  79 agatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactct 178  Q
    ||||| |||||||||| || ||| |||| || |||||| ||||||  | |||||| ||||||| |||||||||||||||  |||||||| | ||| ||||    
T  8321013 agataaaatagacttgcgtgatcaaatgttcctcttttaaaaaaaaca-atcaaacggtttaaattaaaataattaatataatctatggtggaccgctct 8320915  T
Q  179 ta 180  Q
    ||    
T  8320914 ta 8320913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 32469358 - 32469306
Alignment:
Q  128 atcaaatggtttaagttaaaataattaataagatctatggagaaccactctta 180  Q
    |||||| ||||||| ||||||||||||||| ||||||| | | ||||||||||    
T  32469358 atcaaagggtttaaattaaaataattaataggatctatagtggaccactctta 32469306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 559 - 653
Alignment:
Q  97 taatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggagaaccactcttacgattggtccat 192  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||| |||||| | |||||||| ||||||| | |||||||||| | |||||||||    
T  559 taatccaatggtcatctttttaaaaaac-agatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccat 653  T

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Target: scaffold0118 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 43416 - 43544
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    |||| |||| || ||||| ||||| ||||||||||  ||||| ||||||  |||||| |||||| |   ||||| ||||||| ||||||||||||||| |    
T  43416 gtgtcggtgatatatcgttagataaaatagacttgcctaatcaaatggttctctttttaaaaaaaa---tcaaacggtttaaattaaaataattaatagg 43512  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||||||| ||||||||||    
T  43513 atctatggtggaccactcttaagattggtcca 43544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 54025 - 54154
Alignment:
Q  60 gtgttggtggtacatcgtaagatataatagacttgtgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataag 159  Q
    ||||||||||||||||||| |||| ||||||||||  ||||||||||    ||||||  ||||  || ||||||  |||||| ||||||||||||||| |    
T  54025 gtgttggtggtacatcgtatgataaaatagacttgcttaatccaatgacactcttttttaaaa--aaaatcaaacagtttaaattaaaataattaatagg 54122  T
Q  160 atctatggagaaccactcttacgattggtcca 191  Q
    |||||||| | |||||| ||| | ||||||||    
T  54123 atctatggtggaccacttttaaggttggtcca 54154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 125108 - 125203
Alignment:
Q  97 taatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataa-ttaataagatctatggagaaccactcttacgattggtccat 192  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||| |||||| || |||||||| ||||||| | |||||| ||| | |||||||||    
T  125108 taatccaatggtcatctttttaaaaaac-tgatcaaagggtttaaattaaaaaaatttaataaggtctatggtggaccacttttaaggttggtccat 125203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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