View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_132 (Length: 251)
Name: NF0547_low_132
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_132 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 81 - 246
Target Start/End: Complemental strand, 268202 - 268037
Alignment:
| Q |
81 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
180 |
Q |
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| T |
268202 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
268103 |
T |
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| Q |
181 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttct |
246 |
Q |
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| T |
268102 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttct |
268037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 81 - 246
Target Start/End: Complemental strand, 277904 - 277739
Alignment:
| Q |
81 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattgatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277904 |
aacaaagtaacatatattacgaactttagctttgaatgttgtttcaacattgattaatgaaatatcctatttgttcaaatagtggtccatctttgcttgg |
277805 |
T |
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| Q |
181 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277804 |
ctccaatagttccatcccatgaaaaccttccccaaagtattccacaacatcaacccctttgcttct |
277739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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