View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_134 (Length: 251)
Name: NF0547_low_134
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_134 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 28470504 - 28470744
Alignment:
| Q |
11 |
cacagaagcataagatgtagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaa |
110 |
Q |
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| T |
28470504 |
cacataagcataagatgtagtagatcaacttccctgccagtcttagagctgaggctctcctatgagaaaatagttcccagtctactacaaaacaaaagaa |
28470603 |
T |
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| Q |
111 |
aaggtgtgctaaactgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataa |
210 |
Q |
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| T |
28470604 |
aaggtgtgctaaactgcccaaatatcccctataattattccaaatacatttacgtaactcttaaataattgctttaacatataactaccctattgcataa |
28470703 |
T |
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| Q |
211 |
ttagattaactactcaatatttccttttaaattagtgtaat |
251 |
Q |
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| T |
28470704 |
ttagattaactactcaatatttccttttaaattagtgtaat |
28470744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 28488007 - 28488207
Alignment:
| Q |
23 |
agatgtagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaaaaggtgtgctaa |
122 |
Q |
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| T |
28488007 |
agatgtagtagatcaacttctctgccaatctcagagctgaggctctcctctgagaaaatagttctcagtc------aaaacaaaagaaaaggtgtgctaa |
28488100 |
T |
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| Q |
123 |
actgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaacta |
222 |
Q |
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| T |
28488101 |
actgcccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaacca |
28488200 |
T |
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| Q |
223 |
ctcaata |
229 |
Q |
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|| |||| |
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| T |
28488201 |
cttaata |
28488207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 30687372 - 30687570
Alignment:
| Q |
28 |
tagtagatcaacttccctgccagtcttagagctgaggctctcctctgagaaaatagttcccagtctattgcaaaacaaaagaaaaggtgtgctaaactgc |
127 |
Q |
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|||||||| || ||||||||||| |||||||| |||||| |||||||||||||||||||| |||| ||||||| |||| ||||| | ||||||||||| |
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| T |
30687372 |
tagtagatgaagttccctgccagccttagagccgaggctttcctctgagaaaatagttcc--gtctcatgcaaaagaaaaaaaaag-tatgctaaactgc |
30687468 |
T |
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| Q |
128 |
ccaaatatcccctataattatcccaaatacatttacgtaactcttaaataactgctttaacatataactaccctattgcataattagattaactactcaa |
227 |
Q |
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| T |
30687469 |
ccaaatactccctacaattatcccacctacatttatgtaactcctaaataactgccataacgtataactaccctattgcacaattaaattaactacttaa |
30687568 |
T |
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