View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_14 (Length: 544)
Name: NF0547_low_14
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 13574423 - 13574937
Alignment:
| Q |
1 |
atgcaaacccttaattcctatgtcaaccttatattactatttatcttccttctatttgactgattaataaaccagtcaaccttaaactacaacaataaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13574423 |
atgcaaacccttaattcctatgtcaaccttatattactatttatcttccttctatttgattgattaataaaccagtcaaccttaaactacaacaataaat |
13574522 |
T |
|
| Q |
101 |
ggaatccacacatagtgaaaatttaatactatggtt---cccacatagtttcaatttttgtaaaactaatattccgaatttaatccattcacttcacatt |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13574523 |
ggaatccacacatagtgaaaatttaataatatggttcgccccacatagtttcaatttttgtaaaactaatattccgaatttaatccattcacttcacatt |
13574622 |
T |
|
| Q |
198 |
taaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatcacnnnnnnnnnnnnnnnnntctgattgatataatataag |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13574623 |
taaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatcac-aaaaaataaaagaaaatctcattgatataatataag |
13574721 |
T |
|
| Q |
298 |
ctatggcaaaattcatctctgcttcaattgttttggttcttcttgttgtgacaactatgatcaatggagcctatattgctgaagtagaggttgatgggcc |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13574722 |
ctatggcaaaattcatctctgcttcaattgttttggttcttcttgttgtgacaactatgatcaatggagcctatagtgctgaagtagaggttgatgggcc |
13574821 |
T |
|
| Q |
398 |
gtttccgcctgaattgcagaaattatgtgatgattggttttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13574822 |
gtttccgcctgaattgcagaaattatgtgatgattggttttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgc |
13574921 |
T |
|
| Q |
498 |
tctaccggatctgtta |
513 |
Q |
| |
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||||||||| |||||| |
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| T |
13574922 |
tctaccggacctgtta |
13574937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 13570865 - 13571359
Alignment:
| Q |
1 |
atgcaaacccttaattcctatgtcaaccttatattactatttatcttccttctatttgactgattaataaaccagtcaaccttaaactacaacaataaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
13570865 |
atgcaaacccttaattcctatgtcaaccttatattactatttatcttccttctatttgattgattaataaaccagtcaaccttaaactacaaccataaaa |
13570964 |
T |
|
| Q |
101 |
ggaatccacacatagtgaaaatttaatactatggttcccacatagtttcaatttttgtaaaactaatattccgaatttaatccattcacttcacat---t |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13570965 |
ggaatccacacatagtgaaaatttaataatatggttcccacatagtttcaatatttgtaaaactaatattccgaatttaatccattcacttcacatttat |
13571064 |
T |
|
| Q |
198 |
taaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatcacnnnnnnnnnnnnnnnnntctgattgatataatataag |
297 |
Q |
| |
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||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |
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| T |
13571065 |
taaggtattcattagttctataaattggaacaattttgtaactaattcattccatgcaatcac-acaaagtaaaacaaaatctcattg-----atataag |
13571158 |
T |
|
| Q |
298 |
ctatggcaaaattcatctctgcttcaattgttttggttcttcttgttgtgacaactatgatcaatggagcctatattgctgaagtagaggttgatgggcc |
397 |
Q |
| |
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|||||||||||| |||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||| | || || ||| |
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| T |
13571159 |
ctatggcaaaatacatctctgtttcatttgtttcagttctccttgttgtgacaactatgatcaatggagcctatggtgctgaaggagatgatggtgagcc |
13571258 |
T |
|
| Q |
398 |
gtttccgcctgaattgcagaaattatgtgatgattggttttggaagtgtaacgatgatcctcattctgtctactgtcactggtacaacaaaaggttttgc |
497 |
Q |
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||| ||||||| | |||||||| ||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
13571259 |
gttgccgcctggactgcagaaactatgtgatgattggtattggaagtgttacgattatcctaattctgtctattgtcaatggtacaacaaaaggttttgc |
13571358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 176 - 380
Target Start/End: Original strand, 13563761 - 13563963
Alignment:
| Q |
176 |
tttaatccattcacttcacatttaaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatcacnnnnnnnnnnnnnnn |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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| T |
13563761 |
tttaatccattcacttcacatttaaggaaaacagtagttccataaattggaacaatgttgtg-ccaattcattccatgcaatcacacaaaataaaagaaa |
13563859 |
T |
|
| Q |
276 |
nntctgattgatataatataagctatggcaaaattcatctctgcttcaattgttttggttcttcttgttgtgacaactatgatcaatggagcctatattg |
375 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
13563860 |
a-tctcattgatataatataagctatggcaaaattcatctctgcttcttttgttttagttcttcttgttgtgacaactatgatcaatggagcctatagtg |
13563958 |
T |
|
| Q |
376 |
ctgaa |
380 |
Q |
| |
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||||| |
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| T |
13563959 |
ctgaa |
13563963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 14203181 - 14203343
Alignment:
| Q |
209 |
ttagttccataaattagaacaattttgtaaccaattcattccatgcaatcacnnnnnnnnnnnnnnnnn-tctgattgatataatataagctatggcaaa |
307 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
14203181 |
ttagttctataaattggaacaattttgtaaccaattcattccatgcaatcacaaaaaaaataaaagaaaatctcattgatataatataagctatggcaaa |
14203280 |
T |
|
| Q |
308 |
attcatctctgcttcaattgttttggttcttcttgttgtgacaactatgatcaatggagccta |
370 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14203281 |
attcatctctgcttcaattgttttagttcttcttgttgtgacaactatgatcaatggagccta |
14203343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 14203068 - 14203144
Alignment:
| Q |
95 |
ataaatggaatccacacatagtgaaaatttaatactatggttcccacatagtttcaatttttgtaaaactaatattcc |
172 |
Q |
| |
|
||||| ||||| ||||| |||| ||||||||||| |||| |||||||||||||||| |||||||||| ||||||||| |
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|
| T |
14203068 |
ataaaaggaatgcacacgtagtaaaaatttaatagcatggctcccacatagtttcaa-ttttgtaaaaataatattcc |
14203144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 13563696 - 13563745
Alignment:
| Q |
122 |
tttaatactatggttcccacatagtttcaatttttgtaaaactaatattcc |
172 |
Q |
| |
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|||||||| || |||||||||||||||||| |||||||||| ||||||||| |
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| T |
13563696 |
tttaataccattgttcccacatagtttcaa-ttttgtaaaaataatattcc |
13563745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 7421861 - 7421920
Alignment:
| Q |
112 |
atagtgaaaatttaatactatggttcccacatagtttcaatttttgtaaaactaatattcc |
172 |
Q |
| |
|
||||| ||||||||| | ||||| |||||||||||||||| |||||||||| || |||||| |
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|
| T |
7421861 |
atagtaaaaatttaaaagtatggctcccacatagtttcaa-ttttgtaaaaatattattcc |
7421920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 4223693 - 4223778
Alignment:
| Q |
174 |
aatttaatccattcacttcacatttaaggtaaacattagttccataaattagaacaattttgtaaccaattcattccatgcaatca |
259 |
Q |
| |
|
|||||| | |||||||||| ||||||||| ||| |||||||| ||||||| || ||||| | |||| |||||||||||||||| |
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|
| T |
4223693 |
aatttatttcattcacttctcatttaaggaaaatattagttctataaattgaaatgattttagagccaactcattccatgcaatca |
4223778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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