View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_144 (Length: 249)
Name: NF0547_low_144
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_144 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 52141859 - 52141638
Alignment:
| Q |
28 |
accaagaaaattgtatttgcatagtagcaaaaatcctgaaacaattggaagcatttaatcaacaataacataatacattattaaaaagtagaaatatgag |
127 |
Q |
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| T |
52141859 |
accaagaaaattgtatttgcatagtagcaaaaatcctgaaacaattggaagcatttaatcaacaataacatagtacattattaaaaagtagaaatatgag |
52141760 |
T |
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| Q |
128 |
atatgttgctgtgcttgcatcgggaattattaccagtaagtagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtag |
227 |
Q |
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| T |
52141759 |
atatgttgctgtgcttgcattgggaattattaccagtaagtagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtag |
52141660 |
T |
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| Q |
228 |
aacaaacaatacacatagggaa |
249 |
Q |
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|||||||||||||||||||||| |
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| T |
52141659 |
aacaaacaatacacatagggaa |
52141638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 17808089 - 17808162
Alignment:
| Q |
168 |
tagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtagaacaaacaatacac |
241 |
Q |
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| T |
17808089 |
tagtaatgccatttcttgaatctatagtatatccaacgaagaggaacaaacacaaagtagaacaaacaatacac |
17808162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 17807176 - 17807218
Alignment:
| Q |
28 |
accaagaaaattgtatttgcatagtagcaaaaatcctgaaaca |
70 |
Q |
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||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
17807176 |
accaaaaagattgtattggcatagtagcaaaaatcctgaaaca |
17807218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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