View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_145 (Length: 248)
Name: NF0547_low_145
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_145 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 3790510 - 3790554
Alignment:
| Q |
204 |
gctaatacaaggaaggcatcagataataagcggagttttttatca |
248 |
Q |
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| T |
3790510 |
gctaatacaaggaaggcatcagataataagcggagttttttatca |
3790554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 3790420 - 3790460
Alignment:
| Q |
114 |
agaagtctcgtatcaaacctaaatttttcataccaatcaga |
154 |
Q |
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| T |
3790420 |
agaagtctcatatcaaacctaaatttttcataccaatcaga |
3790460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 6845962 - 6845906
Alignment:
| Q |
51 |
gacagtcaacaaggcatcatttcagtctgcccgtctgcttttctacatcatagatca |
107 |
Q |
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| T |
6845962 |
gacaatcaacatggcatcatttcagtccgcccgtctgcttttcaacatcattgatca |
6845906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 6845811 - 6845773
Alignment:
| Q |
205 |
ctaatacaaggaaggcatcagataataagcggagttttt |
243 |
Q |
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| T |
6845811 |
ctaatacagggaaggcatcagataataagcggagttttt |
6845773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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