View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_147 (Length: 240)

Name: NF0547_low_147
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_147
NF0547_low_147
[»] chr3 (12 HSPs)
chr3 (8-209)||(41874457-41874658)
chr3 (85-208)||(35244113-35244235)
chr3 (45-147)||(28133729-28133831)
chr3 (134-208)||(35243927-35244000)
chr3 (46-124)||(27682223-27682301)
chr3 (46-124)||(4602325-4602403)
chr3 (45-124)||(26666997-26667076)
chr3 (45-147)||(4609114-4609216)
chr3 (208-240)||(42636275-42636307)
chr3 (205-240)||(31882891-31882926)
chr3 (208-240)||(5442460-5442492)
chr3 (208-240)||(43175656-43175688)
[»] chr5 (16 HSPs)
chr5 (46-179)||(8081480-8081612)
chr5 (45-147)||(25725807-25725909)
chr5 (46-147)||(25502025-25502126)
chr5 (45-124)||(10410830-10410909)
chr5 (46-148)||(25506938-25507040)
chr5 (49-147)||(40382760-40382858)
chr5 (46-124)||(6742574-6742652)
chr5 (46-109)||(10412418-10412481)
chr5 (208-240)||(7208114-7208146)
chr5 (175-208)||(8080966-8080999)
chr5 (208-240)||(2351860-2351892)
chr5 (156-195)||(6569906-6569946)
chr5 (208-240)||(8137017-8137049)
chr5 (208-240)||(11963521-11963553)
chr5 (208-240)||(31879960-31879992)
chr5 (208-240)||(41459768-41459800)
[»] chr1 (8 HSPs)
chr1 (46-147)||(46679711-46679812)
chr1 (46-147)||(44782183-44782284)
chr1 (87-209)||(33773148-33773269)
chr1 (155-209)||(902135-902189)
chr1 (208-240)||(844677-844709)
chr1 (209-237)||(17888140-17888168)
chr1 (208-240)||(40811324-40811356)
chr1 (208-240)||(50304840-50304872)
[»] chr2 (13 HSPs)
chr2 (46-147)||(1015730-1015831)
chr2 (46-147)||(17308696-17308797)
chr2 (86-208)||(25302758-25302879)
chr2 (85-208)||(25306753-25306875)
chr2 (85-208)||(41602398-41602520)
chr2 (45-147)||(30191589-30191691)
chr2 (61-147)||(33187188-33187274)
chr2 (46-121)||(14007774-14007849)
chr2 (46-124)||(45035187-45035265)
chr2 (46-124)||(45033392-45033470)
chr2 (48-123)||(3372454-3372529)
chr2 (207-240)||(34338990-34339023)
chr2 (208-240)||(7761451-7761483)
[»] chr8 (14 HSPs)
chr8 (46-147)||(30634229-30634330)
chr8 (54-147)||(1173517-1173610)
chr8 (45-147)||(1175119-1175224)
chr8 (46-124)||(35674837-35674915)
chr8 (59-116)||(35673345-35673402)
chr8 (85-167)||(44687138-44687219)
chr8 (207-240)||(30542914-30542947)
chr8 (208-240)||(6386756-6386788)
chr8 (208-240)||(7394707-7394739)
chr8 (208-240)||(27104139-27104171)
chr8 (208-240)||(31513476-31513508)
chr8 (208-240)||(37474880-37474912)
chr8 (208-240)||(38047526-38047558)
chr8 (208-240)||(39643063-39643095)
[»] chr7 (11 HSPs)
chr7 (46-147)||(29924639-29924740)
chr7 (45-127)||(21464539-21464623)
chr7 (152-209)||(34844110-34844167)
chr7 (129-209)||(30511104-30511183)
chr7 (209-240)||(1870319-1870350)
chr7 (209-240)||(9913708-9913739)
chr7 (209-240)||(9927396-9927427)
chr7 (207-240)||(17237260-17237293)
chr7 (207-240)||(43158564-43158597)
chr7 (208-240)||(10932436-10932468)
chr7 (208-240)||(11250801-11250833)
[»] chr6 (11 HSPs)
chr6 (45-147)||(34350333-34350435)
chr6 (46-117)||(15689073-15689144)
chr6 (155-209)||(14618982-14619036)
chr6 (155-209)||(14611142-14611196)
chr6 (158-208)||(14620560-14620610)
chr6 (208-240)||(15276854-15276886)
chr6 (145-184)||(32080021-32080060)
chr6 (74-124)||(9373599-9373649)
chr6 (208-240)||(11613708-11613740)
chr6 (208-240)||(17868015-17868047)
chr6 (208-240)||(17877798-17877830)
[»] chr4 (7 HSPs)
chr4 (46-144)||(4847688-4847786)
chr4 (48-124)||(28395555-28395631)
chr4 (85-209)||(8005851-8005974)
chr4 (145-208)||(24807483-24807546)
chr4 (157-209)||(52545222-52545274)
chr4 (156-209)||(51295221-51295274)
chr4 (208-240)||(24002522-24002554)
[»] scaffold0006 (1 HSPs)
scaffold0006 (145-206)||(39206-39266)
[»] scaffold0208 (1 HSPs)
scaffold0208 (208-240)||(2223-2255)
[»] scaffold0027 (1 HSPs)
scaffold0027 (208-240)||(15352-15384)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 41874658 - 41874457
Alignment:
Q  8 cgaacaaaatcaatcaatttgaaacggaccaaacactttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaa 107  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  41874658 cgaataaaatcaatcaatttgaaacagaccaaacaccttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaa 41874559  T
Q  108 ttctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactc 207  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874558 ttctctctaggagtcattaccaagaaacaattgtataaaaagataattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactc 41874459  T
Q  208 ta 209  Q
    ||    
T  41874458 ta 41874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 35244235 - 35244113
Alignment:
Q  85 caatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatata 184  Q
    ||||||||| ||||| ||  |||| || |||||||||||| || |||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||    
T  35244235 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaaaaattatataaaa-gatgattgaaatgatacatgagtgttcctatatata 35244137  T
Q  185 gagtttagttgtgtaactaactct 208  Q
    ||||||||||||||||||||||||    
T  35244136 gagtttagttgtgtaactaactct 35244113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 28133831 - 28133729
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||| |||| |||||||||||| || ||||  |||||| |||    
T  28133831 ttgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaata 28133732  T
Q  145 aaa 147  Q
    |||    
T  28133731 aaa 28133729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 35243927 - 35244000
Alignment:
Q  134 acaattgtataaaaagatgattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactct 208  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  35243927 acaattgtataaaa-gatgattgaaatgatacatgagtgttcctatatatagagtttagttgtgtaattaactct 35244000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 27682301 - 27682223
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||| |||| ||||||||||||    
T  27682301 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcat 27682223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 4602403 - 4602325
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||| || |||| |||| |||||||    
T  4602403 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcat 4602325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 26666997 - 26667076
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    |||| ||||||||||||||| ||||||||||| |||||||| |||||||  ||||||||||||||||  ||| |||||||    
T  26666997 ttgtcatgaatcaaaggatttcatggttctagatcaaatgcgatggaaaggtagattgtgtaattctccctaagagtcat 26667076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 4609216 - 4609114
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| ||||  || ||||| || |||| ||||| |||||| || ||||  |||||| |||    
T  4609216 ttgttatgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaata 4609117  T
Q  145 aaa 147  Q
    |||    
T  4609116 aaa 4609114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 42636275 - 42636307
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||||||||||||||||||||||||||||    
T  42636275 tagggtgcatttgatttgctaaaaaatgaagga 42636307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 31882891 - 31882926
Alignment:
Q  205 ctctagggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31882891 ctctagggtgcgtttgatttgctaaaaaatgaagga 31882926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 5442492 - 5442460
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  5442492 tagggtgcgtttgatttgctaaaaaatgaagga 5442460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 43175688 - 43175656
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  43175688 tagggtgcgtttgatttgctaaaaaatgaagga 43175656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 8081612 - 8081480
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |    
T  8081612 tgttatgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtat-a 8081514  T
Q  146 aaagatgattgaaatggtacatgagtgttcctat 179  Q
    |||||||||||||||| |||||| ||||||||||    
T  8081513 aaagatgattgaaatgatacatgggtgttcctat 8081480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 25725807 - 25725909
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  25725807 ttgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtata 25725906  T
Q  145 aaa 147  Q
    |||    
T  25725907 aaa 25725909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 25502025 - 25502126
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  25502025 tgttatgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataa 25502124  T
Q  146 aa 147  Q
    ||    
T  25502125 aa 25502126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 10410909 - 10410830
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10410909 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 10410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 25506938 - 25507040
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||| ||| ||| ||||||| |||||||||||||||||    
T  25506938 tgttatgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattgtataa 25507037  T
Q  146 aaa 148  Q
    |||    
T  25507038 aaa 25507040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 40382760 - 40382858
Alignment:
Q  49 tatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaa 147  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||| ||||    
T  40382760 tatgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctaggaatcattactaagaaacaattgtaaaaaa 40382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 6742652 - 6742574
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||| |||| |||| |||||||    
T  6742652 tgttatgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctctacgagtcat 6742574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 10412481 - 10412418
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaatt 109  Q
    |||||| ||| |||||||| ||||||| ||||||||||||||| |||| |||||||||||||||    
T  10412481 tgttataaattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaatt 10412418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 7208114 - 7208146
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||||||||||||||||||||||||||||    
T  7208114 tagggtgcatttgatttgctaaaaaatgaagga 7208146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 8080999 - 8080966
Alignment:
Q  175 cctatatatagagtttagttgtgtaactaactct 208  Q
    |||||||| |||||||||||||||||||||||||    
T  8080999 cctatatagagagtttagttgtgtaactaactct 8080966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 2351892 - 2351860
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  2351892 tagggtgcgtttgatttgctaaaaaatgaagga 2351860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 6569946 - 6569906
Alignment:
Q  156 gaaatggtaca-tgagtgttcctatatatagagtttagttg 195  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  6569946 gaaatggtacaatgagtgttcctatatatagagattagttg 6569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 8137049 - 8137017
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  8137049 tagggtgcgtttgatttgctaaaaaatgaagga 8137017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 11963553 - 11963521
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  11963553 tagggtgcgtttgatttgctaaaaaatgaagga 11963521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 31879960 - 31879992
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  31879960 tagggtgcgtttgatttgctaaaaaatgaagga 31879992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 41459800 - 41459768
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  41459800 tagggtgcgtttgatttgctaaaaaatgaagga 41459768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 46679812 - 46679711
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46679812 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataa 46679713  T
Q  146 aa 147  Q
    ||    
T  46679712 aa 46679711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 44782183 - 44782284
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  44782183 tgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataa 44782282  T
Q  146 aa 147  Q
    ||    
T  44782283 aa 44782284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 33773269 - 33773148
Alignment:
Q  87 atggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatataga 186  Q
    ||||||| ||||| ||  |||| || |||||||||||| || || |||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||    
T  33773269 atggaaagatagaatgcataatactctctaggagtcatcactaaaaaacaattgtataaaa-gatgatggaaatgatacatgagtgttcttatatataga 33773171  T
Q  187 gtttagttgtgtaactaactcta 209  Q
    ||||||| |||||||||||||||    
T  33773170 gtttagtcgtgtaactaactcta 33773148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 902189 - 902135
Alignment:
Q  155 tgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  902189 tgaaatgatacatgagtgttcctatatagagagtttaattgtgtaactaactcta 902135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 844677 - 844709
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  844677 tagggtgcgtttgatttgctaaaaaatgaagga 844709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 17888168 - 17888140
Alignment:
Q  209 agggtgcatttgatttgctaaaaaatgaa 237  Q
    |||||||||||||||||||||||||||||    
T  17888168 agggtgcatttgatttgctaaaaaatgaa 17888140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 40811324 - 40811356
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  40811324 tagggtgcgtttgatttgctaaaaaatgaagga 40811356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 50304872 - 50304840
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  50304872 tagggtgcgtttgatttgctaaaaaatgaagga 50304840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 1015831 - 1015730
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  1015831 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattgtataa 1015732  T
Q  146 aa 147  Q
    ||    
T  1015731 aa 1015730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 17308797 - 17308696
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17308797 tgttatgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattgtataa 17308698  T
Q  146 aa 147  Q
    ||    
T  17308697 aa 17308696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 25302879 - 25302758
Alignment:
Q  86 aatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatatag 185  Q
    |||||||| ||||| ||  |||| || |||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  25302879 aatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaa-gatgattgaaatgatacatgagtgatcctatatatag 25302781  T
Q  186 agtttagttgtgtaactaactct 208  Q
    |||||||||||||||||||||||    
T  25302780 agtttagttgtgtaactaactct 25302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 25306875 - 25306753
Alignment:
Q  85 caatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatata 184  Q
    ||||||||| ||||| ||  |||| || |||| ||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  25306875 caatggaaagatagaatgcataatgctctctatgagtcatcactaagaaacaattgtataaaa-gatgattgaaatgttacatgagtgttcctatatata 25306777  T
Q  185 gagtttagttgtgtaactaactct 208  Q
    |||||||| |||||||||||||||    
T  25306776 gagtttagctgtgtaactaactct 25306753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 41602520 - 41602398
Alignment:
Q  85 caatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatata 184  Q
    ||||||||| ||||| ||  |||| || |||||||||||| || ||||||||||||||||||| | || |||||||| ||||||||||||||||||||||    
T  41602520 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaagg-tggttgaaatgatacatgagtgttcctatatata 41602422  T
Q  185 gagtttagttgtgtaactaactct 208  Q
    || ||||||| |||||||||||||    
T  41602421 gaatttagttatgtaactaactct 41602398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 30191691 - 30191589
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||| | ||||||| ||||  | ||||||||||||||||||||||||    
T  30191691 ttgttatgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctctaaaaatcattaccaagaaacaattgtata 30191592  T
Q  145 aaa 147  Q
    |||    
T  30191591 aaa 30191589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 33187188 - 33187274
Alignment:
Q  61 gattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaa 147  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattgtataaaa 33187274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 14007849 - 14007774
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||    
T  14007849 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctaggagt 14007774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 45035265 - 45035187
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||| ||||||||||||    
T  45035265 tgttatgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcat 45035187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 45033470 - 45033392
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  45033470 tgttatgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcat 45033392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 3372454 - 3372529
Alignment:
Q  48 ttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtca 123  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| | ||||||| ||| |||||||    
T  3372454 ttatgaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctctgggagtca 3372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 34339023 - 34338990
Alignment:
Q  207 ctagggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||| ||||||||||||||||||||||||    
T  34339023 ctagggtgcgtttgatttgctaaaaaatgaagga 34338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 7761451 - 7761483
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  7761451 tagggtgcgtttgatttgctaaaaaatgaagga 7761483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 30634229 - 30634330
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| |||||||||||||||||    
T  30634229 tgttatgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataa 30634328  T
Q  146 aa 147  Q
    ||    
T  30634329 aa 30634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 1173610 - 1173517
Alignment:
Q  54 atcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaa 147  Q
    |||||||||||||||  |||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1173610 atcaaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattgtataaaa 1173517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 1175224 - 1175119
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtc---attaccaagaaacaattgt 141  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||   |||||||||||||||||||    
T  1175224 ttgttatgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcattattaccaagaaacaattgt 1175125  T
Q  142 ataaaa 147  Q
    ||||||    
T  1175124 ataaaa 1175119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 35674837 - 35674915
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||| |||||  |||||| |||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||    
T  35674837 tgttacgaatctgaggattgcatggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcat 35674915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 35673345 - 35673402
Alignment:
Q  59 aggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttcta 116  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||    
T  35673345 aggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctcta 35673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 44687219 - 44687138
Alignment:
Q  85 caatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacat 167  Q
    ||||||||| ||||| ||  |||| || ||||||| |||| || ||||||||||||||| ||||||||||||||||| |||||    
T  44687219 caatggaaagatagaatgcataatgctctctaggaatcatcactaagaaacaattgtat-aaaagatgattgaaatgatacat 44687138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 30542914 - 30542947
Alignment:
Q  207 ctagggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||| ||||||||||||||||||||||||    
T  30542914 ctagggtgcgtttgatttgctaaaaaatgaagga 30542947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 6386788 - 6386756
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  6386788 tagggtgcgtttgatttgctaaaaaatgaagga 6386756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 7394707 - 7394739
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  7394707 tagggtgcgtttgatttgctaaaaaatgaagga 7394739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 27104171 - 27104139
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  27104171 tagggtgcgtttgatttgctaaaaaatgaagga 27104139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 31513476 - 31513508
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  31513476 tagggtgcgtttgatttgctaaaaaatgaagga 31513508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 37474912 - 37474880
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  37474912 tagggtgcgtttgatttgctaaaaaatgaagga 37474880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 38047558 - 38047526
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  38047558 tagggtgcgtttgatttgctaaaaaatgaagga 38047526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 39643095 - 39643063
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  39643095 tagggtgcgtttgatttgctaaaaaatgaagga 39643063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 29924740 - 29924639
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataa 145  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||| |||||    
T  29924740 tgttattaatcaaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaaaaaacaattatataa 29924641  T
Q  146 aa 147  Q
    ||    
T  29924640 aa 29924639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 21464623 - 21464539
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaat--tctttctaggagtcattac 127  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||  ||| |||||||||||||||    
T  21464623 ttgttataaatcaaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattac 21464539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 34844167 - 34844110
Alignment:
Q  152 gattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34844167 gattgaaatgatacatgagtgttcctatatatagagtttagttgtgtaactaactcta 34844110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 30511183 - 30511104
Alignment:
Q  129 aagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    ||||||||||||||||||| |||||   |||||||||||| |||| |||||||||||||||||||||  ||||||||||||    
T  30511183 aagaaacaattgtataaaa-gatgagataaatggtacatgggtgtccctatatatagagtttagttgaataactaactcta 30511104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 1870350 - 1870319
Alignment:
Q  209 agggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||||||||||||||||||||||||||    
T  1870350 agggtgcatttgatttgctaaaaaatgaagga 1870319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 9913739 - 9913708
Alignment:
Q  209 agggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||||||||||||||||||||||||||    
T  9913739 agggtgcatttgatttgctaaaaaatgaagga 9913708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 9927427 - 9927396
Alignment:
Q  209 agggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||||||||||||||||||||||||||    
T  9927427 agggtgcatttgatttgctaaaaaatgaagga 9927396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 17237293 - 17237260
Alignment:
Q  207 ctagggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||| ||||||||||||||||||||||||    
T  17237293 ctagggtgcgtttgatttgctaaaaaatgaagga 17237260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 43158564 - 43158597
Alignment:
Q  207 ctagggtgcatttgatttgctaaaaaatgaagga 240  Q
    ||||||||| ||||||||||||||||||||||||    
T  43158564 ctagggtgcgtttgatttgctaaaaaatgaagga 43158597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 10932436 - 10932468
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  10932436 tagggtgcgtttgatttgctaaaaaatgaagga 10932468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 11250833 - 11250801
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  11250833 tagggtgcgtttgatttgctaaaaaatgaagga 11250801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 34350333 - 34350435
Alignment:
Q  45 ttgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| | ||||||||||||| ||||||||||||||||    
T  34350333 ttgttataaatcaaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattgtata 34350432  T
Q  145 aaa 147  Q
    |||    
T  34350433 aaa 34350435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 15689144 - 15689073
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctag 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  15689144 tgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctag 15689073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 14619036 - 14618982
Alignment:
Q  155 tgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14619036 tgaaatgatacatgagtgttcctatatatagagtttagttgtgtaactaactcta 14618982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 14611196 - 14611142
Alignment:
Q  155 tgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14611196 tgaaatgatacacgagtgttcctatatatagagtttagttgtgtaactaactcta 14611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 14620610 - 14620560
Alignment:
Q  158 aatggtacatgagtgttcctatatatagagtttagttgtgtaactaactct 208  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  14620610 aatgatacatgagttttcctatatatagagtttagttgtgtaactaactct 14620560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 15276854 - 15276886
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||||||||||||||||||||||||||||    
T  15276854 tagggtgcatttgatttgctaaaaaatgaagga 15276886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 32080060 - 32080021
Alignment:
Q  145 aaaagatgattgaaatggtacatgagtgttcctatatata 184  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  32080060 aaaagatgattgaaatgatacacgagtgttcctatatata 32080021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 9373599 - 9373649
Alignment:
Q  74 taggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    |||||||||||||||||||| ||||| ||||||||| | | ||||||||||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcat 9373649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 11613708 - 11613740
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  11613708 tagggtgcgtttgatttgctaaaaaatgaagga 11613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 17868047 - 17868015
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  17868047 tagggtgcgtttgatttgctaaaaaatgaagga 17868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 17877830 - 17877798
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  17877830 tagggtgcgtttgatttgctaaaaaatgaagga 17877798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 4847688 - 4847786
Alignment:
Q  46 tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtata 144  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| | ||| ||||||||||||||||||||||||||    
T  4847688 tgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtata 4847786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 28395555 - 28395631
Alignment:
Q  48 ttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaaaatagattgtgtaattctttctaggagtcat 124  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28395555 ttatgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcat 28395631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 8005974 - 8005851
Alignment:
Q  85 caatggaaaaatagattgtgtaattctttctaggagtcattaccaagaaacaattgtataaaaagatgattgaaatggtacatgagtgttcctatatata 184  Q
    ||||||||| ||||| ||  |||| || |||||||||||| || |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  8005974 caatggaaagatagaatgcataatgctctctaggagtcatcacaaagaaacaattgaataaaa-gatgattgaaatgatacatgagtgttcctatatata 8005876  T
Q  185 gagtttagttgtgtaactaactcta 209  Q
    ||| ||||||  |||||||| ||||    
T  8005875 gagattagttaagtaactaattcta 8005851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 24807546 - 24807483
Alignment:
Q  145 aaaagatgattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactct 208  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  24807546 aaaagatgattgaaatgatacatgagtgttcctatatatagattttagttgtgtaactaactct 24807483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 52545222 - 52545274
Alignment:
Q  157 aaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52545222 aaatgatacatgagtgttcctatatatagagtttagttgtgtaactaactcta 52545274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 51295274 - 51295221
Alignment:
Q  156 gaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaactcta 209  Q
    |||||| | ||| ||||||||||||||||  |||||||||||||||||||||||    
T  51295274 gaaatgatgcattagtgttcctatatataatgtttagttgtgtaactaactcta 51295221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 24002554 - 24002522
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  24002554 tagggtgcgtttgatttgctaaaaaatgaagga 24002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 39266 - 39206
Alignment:
Q  145 aaaagatgattgaaatggtacatgagtgttcctatatatagagtttagttgtgtaactaact 206  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39266 aaaagatgat-gaaatgatacatgagtgttcctatatatagagtttagttgtgtaactaact 39206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 2223 - 2255
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  2223 tagggtgcgtttgatttgctaaaaaatgaagga 2255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 15384 - 15352
Alignment:
Q  208 tagggtgcatttgatttgctaaaaaatgaagga 240  Q
    |||||||| ||||||||||||||||||||||||    
T  15384 tagggtgcgtttgatttgctaaaaaatgaagga 15352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 670 times since January 2019
Visitors: 3655