View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_15 (Length: 531)
Name: NF0547_low_15
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 114 - 466
Target Start/End: Original strand, 27278159 - 27278514
Alignment:
| Q |
114 |
gttagttataattatttgtatggaaaatttaattgagaatttacatgcacgtgcatgcatgatgcatatat-----tcacatattaaaatcacttgggtt |
208 |
Q |
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| T |
27278159 |
gttagttataattatttgtatggaaaatttaattgagaatttacatgcacgtgcatgcatgatgcatatatggaatttacatat--aaataacttgggtt |
27278256 |
T |
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| Q |
209 |
tcactaggatgatttgtcaaaagtactaccttttaggatttaatggcatttgagtctttattgtaacaaatgtagtcnnnnnnn-gtggaaatgtggtca |
307 |
Q |
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| T |
27278257 |
gctctaggatgatttgtcaaaagtac---cttttaggatttaatggcatttgagtctttattgtaacaaatgtagtcaaaaaaaagtggaaatgaggtca |
27278353 |
T |
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| Q |
308 |
ttgaatagaaggatgtgcatccatagtgccaaaatatgtcatttctacaaaagatgaacaagactgatttttatgaacttatgttaacaatatgttgtca |
407 |
Q |
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| T |
27278354 |
ttgaatagaaggatgtgcatccatagtgccaaaatatgtcatttctacaaaagatgaacaagactgatttttatgaacttatgttgacaatatgttgtca |
27278453 |
T |
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| Q |
408 |
tgcaaacaccttaactaatgtaattaacctaatattagttcat--tgtgtgctattttggt |
466 |
Q |
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| T |
27278454 |
tgcaaacaccttaactaatgtaattaacctaatattagttcattatgtgtactattttggt |
27278514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 27276590 - 27276662
Alignment:
| Q |
30 |
aattaatcattaacaattgaatggatacttcacatcaataatattgtaattagtttgttataattatttattc |
102 |
Q |
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| T |
27276590 |
aattaatcattaacaattgaatggatacttcacatcaataacattgtaattagtttgttataattatttattc |
27276662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 523
Target Start/End: Original strand, 27278506 - 27278540
Alignment:
| Q |
489 |
tattttggttaagatgtcgatataatgtctctgct |
523 |
Q |
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| T |
27278506 |
tattttggttaagatgtcgatataatgtctttgct |
27278540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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