View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_160 (Length: 201)
Name: NF0547_low_160
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_160 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 38 - 184
Target Start/End: Original strand, 37834968 - 37835114
Alignment:
| Q |
38 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaact |
137 |
Q |
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| T |
37834968 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttttattcaatgaacaact |
37835067 |
T |
|
| Q |
138 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagt |
184 |
Q |
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| T |
37835068 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagt |
37835114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 12280991 - 12281111
Alignment:
| Q |
64 |
acaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
163 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12280991 |
acaacggataacatcctccaccagactacatgatatagcatgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
12281090 |
T |
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| Q |
164 |
gtaaaaacaatatcacaaagt |
184 |
Q |
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| T |
12281091 |
gtaaaaacaatatcacaaagt |
12281111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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