View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_162 (Length: 201)
Name: NF0547_low_162
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_162 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 28470981 - 28471146
Alignment:
| Q |
16 |
gctgttgcgagaaaactggatcaccaacaggcgcaagcgcaactacatgattcttgattcaaagcaaatgttcctcaatcgaacgatcattgagagaagt |
115 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28470981 |
gctgttgcgacaaaactggatcaccaacaggtgcaagcgcaactacacggttcttgattcaaagcaaatgttcctcaaccgaacgatcattgagagaagt |
28471080 |
T |
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| Q |
116 |
agagcaaagtatcactcgtaactgccgtgctttcgcaggagtaagtttatgaaaatgtgcaagaac |
181 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471081 |
agagcaaagtatcactcgtaacagtcgtgctttcgcaggagtaagtttatgaaaatgtgcaagaac |
28471146 |
T |
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