View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_17 (Length: 530)
Name: NF0547_low_17
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Original strand, 39004992 - 39005477
Alignment:
| Q |
13 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacattaaatttccaaataagttatatatgtttagctccta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39004992 |
aatataaaagttccaactaattattaaatgactactaaggctaaacttttaccgtaagtaacataaaatttccaaataagttatatatgtttagctccta |
39005091 |
T |
|
| Q |
113 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactgcataaaattagctagtgttagattcaattgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39005092 |
ccaagtttggttcccacaagcacaattggtacagttggagcataatgtctgagttcaggaatccactgcataaaattagctagtgttagattcaattgaa |
39005191 |
T |
|
| Q |
213 |
taaaactataccatataaaaattcacaagtgaataaatgtgccttcaaaataacctttttagatatattctcatagctggctctgctgagtagtgaaaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39005192 |
taaaactataccatataaaaattcacaagtgaataaatgtg---tcacaataacctttttagatatattctcatagctggctctgctgagtagtgaaaag |
39005288 |
T |
|
| Q |
313 |
gccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctgaatttttatgaagccataaaaatttagtaaata |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
39005289 |
gccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctgaatttttatgaagccacaaaaatttaataaata |
39005388 |
T |
|
| Q |
413 |
ttgtaaattgtaagacgtagattcattaccgcctaaagaaaatgcttaccagcagtgtcccataatccaagattaactgtactgccatc |
501 |
Q |
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| T |
39005389 |
ttgtaaattgtaagacgtagattcgttaccgcctaaagaaaatggttaccagcagtgtcccataatccaagattaactgtgctgccatc |
39005477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 34676933 - 34676875
Alignment:
| Q |
122 |
gttcccacaagcacaattggtacagttggagcataatgtctcagttcaggaatccactg |
180 |
Q |
| |
|
|||||||| |||||||| || ||| ||||||||||||||||||| |||| |||||||| |
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|
| T |
34676933 |
gttcccaccagcacaataggcacatttggagcataatgtctcagctcagatatccactg |
34676875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 34676741 - 34676677
Alignment:
| Q |
315 |
caacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctg |
379 |
Q |
| |
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||||||||||||||| |||||||| || ||||||||||| | || || ||||| |||||||||| |
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| T |
34676741 |
caacaaaaacacatcagctcctctgtaactcaatggccttaatctattgtaatcttcttgtcctg |
34676677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 35253833 - 35253760
Alignment:
| Q |
307 |
gaaaaggccaacaaaaacacatctgctcctctatagctcaatggcctaagcctgttataatcctcttgtcctga |
380 |
Q |
| |
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||||| ||||| | ||| |||||||| ||||| |||||||| ||||| ||||| || ||||||||||| ||||| |
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| T |
35253833 |
gaaaaagccaagacaaagacatctgcccctctgtagctcaaaggcctcagcctattgtaatcctcttgccctga |
35253760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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