View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_19 (Length: 523)
Name: NF0547_low_19
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 22 - 517
Target Start/End: Original strand, 9106243 - 9106736
Alignment:
| Q |
22 |
atatcaaacatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaa |
121 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106243 |
atatcaaacatttccaaaattttgtgacaa--cttctggcgccatatatcccaaggtttctctagcatcggtaatggacaccaaacaatggttattagaa |
9106340 |
T |
|
| Q |
122 |
caaaatttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9106341 |
caaaatttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatac |
9106440 |
T |
|
| Q |
222 |
aatcttcgtgaaaatactcaattcctttttctatactaagaatttgtcgtagctattttgaacaatcgtcacaaaatgatgattctatttaacaattgac |
321 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9106441 |
aatcttcgtgaagatactcaattcctttttctatactaagaatttgtcgtagctattttgaacaatcgtcacaaaatgataattctatttaacaattgac |
9106540 |
T |
|
| Q |
322 |
atgatcacttctgctattgataagcaggagatttagaagattcagtagtgtaatcgaagcaccgtgtgctcctgccatctaattnnnnnnnttatgcaag |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
9106541 |
atgatcacttctgctattgataagcaggagatttagaagattcagtagtgtaatcaaagcaccgtgtgctcctgccatctaattaaaaaaattatgcaag |
9106640 |
T |
|
| Q |
422 |
ggttaatttgttctaacaaaagaaagtgaccataataaaaattacattatgctcgtagtcggtgtgaaagaaacaaaatataaaatgaaccctatg |
517 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9106641 |
ggttaatttgttctaacaaaagaaagtgacgataataaaaattacattatgctcgtagtcggtgtgaaagaaacaaaatataaaatgaaccctatg |
9106736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 9125160 - 9125383
Alignment:
| Q |
27 |
aaacatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaacaaaa |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| | || ||||| || | || | || || ||||| || |
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|
| T |
9125160 |
aaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctagccgcagtcatggatacaacactaacattctttgaacataa |
9125259 |
T |
|
| Q |
127 |
tttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatct |
226 |
Q |
| |
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|||||| | ||||| ||||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
9125260 |
tttggcgagtccaaagtctgaaatttttggagtgaaggtgtcatctagcaaaacattgtgagggttgatgtcaaagtgaagaattggatggctacaaccc |
9125359 |
T |
|
| Q |
227 |
tcgtgaaaatactcaattcctttt |
250 |
Q |
| |
|
|| |||| |||||||||||||||| |
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|
| T |
9125360 |
tcatgaagatactcaattcctttt |
9125383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 9085988 - 9086211
Alignment:
| Q |
27 |
aaacatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaacaaaa |
126 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| | || |||||||| | || | || || ||||| || |
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|
| T |
9085988 |
aaacattcccaaaatttcgtgacaaaacttcaggcgccatatatcccaaggttcccctagcagctgtcatggacactacactaatattcttggaacataa |
9086087 |
T |
|
| Q |
127 |
tttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatct |
226 |
Q |
| |
|
|||||| | ||||| ||||||| |||||| ||||| | |||||| ||||||||||||||||||| ||||||||||| || ||||||||| ||||| | |
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|
| T |
9086088 |
tttggcgagtccaaagtctgaaatttttggagtgaaggtttcatctagcaaaacattgtgagggttaatgtcaaagtgcaggattggatggctacaaccc |
9086187 |
T |
|
| Q |
227 |
tcgtgaaaatactcaattcctttt |
250 |
Q |
| |
|
|| |||| |||||| ||||||||| |
|
|
| T |
9086188 |
tcatgaagatactcgattcctttt |
9086211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 8978984 - 8979202
Alignment:
| Q |
29 |
acatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaacaaaatt |
128 |
Q |
| |
|
||||| ||||||||| ||||| |||||| || ||||||||||||||||| || ||||| | || |||||||| | || | || | ||||| |||| |
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|
| T |
8978984 |
acattaccaaaatttcttgacagaacttcaggtgccatatatcccaaggtacccctagccgctgtcatggacactacactacaattcatggaacataatt |
8979083 |
T |
|
| Q |
129 |
tggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatcttc |
228 |
Q |
| |
|
|||| | |||||||||||||| |||||| || ||| ||||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||| | | |
|
|
| T |
8979084 |
tggcgagaccaaaatctgaaatttttggagttaatgtgtcatcgagcaaaacattgtgagggttgatgtcaaaatgaaggattgaatgactacaaccctg |
8979183 |
T |
|
| Q |
229 |
gtgaaaatactcaattcct |
247 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
8979184 |
atgaagatactcaattcct |
8979202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 27 - 257
Target Start/End: Original strand, 9069692 - 9069922
Alignment:
| Q |
27 |
aaacatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaacaaaa |
126 |
Q |
| |
|
||||||||||||||||| | |||| ||||| || |||||||||||||||||||| |||||| | || |||||||| | || | | || || | ||| || |
|
|
| T |
9069692 |
aaacatttccaaaatttcgagacactacttcgggtgccatatatcccaaggttcccctagcagctgtcatggacactatactaagattcttggcacataa |
9069791 |
T |
|
| Q |
127 |
tttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaatct |
226 |
Q |
| |
|
|||||| | ||||| || |||| |||||| ||||| |||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| | |
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|
| T |
9069792 |
tttggcgagcccaaagtcagaaatttttggagtgaaggaatcatctaacaaaacattgcgagggttgatgtcaaagtgaataattggatggctacagccc |
9069891 |
T |
|
| Q |
227 |
tcgtgaaaatactcaattcctttttctatac |
257 |
Q |
| |
|
|| |||| |||||| ||| ||||| |||||| |
|
|
| T |
9069892 |
tcatgaagatactcgattgcttttgctatac |
9069922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 8861584 - 8861778
Alignment:
| Q |
29 |
acatttccaaaattttgtgacaaaacttctggcgccatatatcccaaggttcctctagcatcggtaatggacaccaaacaatggttattagaacaaaatt |
128 |
Q |
| |
|
||||| ||||||||| ||| | |||||| |||||||| |||||||||||||| ||||| | || |||||||| | | | | || || ||||| |||| |
|
|
| T |
8861584 |
acattcccaaaatttcttgatagaacttcaggcgccatgtatcccaaggttcccttagcagctgtcatggacacaacgctaagattcttggaacataatt |
8861683 |
T |
|
| Q |
129 |
tggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaattggatggatacaa |
223 |
Q |
| |
|
|||| | ||||||||| |||| ||||||||| || |||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
8861684 |
tggcgagaccaaaatccgaaatttttggcgtaaaggattcatctagcaaaacattgtgagggttgatgtcgaagtgaattattggatggttacaa |
8861778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 9337763 - 9337680
Alignment:
| Q |
128 |
ttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
211 |
Q |
| |
|
||||| ||||||||||||| || ||| || ||||| ||||||||| ||| ||||| ||||| |||||||||||||| |||||| |
|
|
| T |
9337763 |
ttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaatt |
9337680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 9364622 - 9364539
Alignment:
| Q |
128 |
ttggcaaaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
211 |
Q |
| |
|
||||| ||||||||||||| || ||| || ||||| ||||||||| ||| ||||| ||||| |||||||||||||| |||||| |
|
|
| T |
9364622 |
ttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaatt |
9364539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 9257397 - 9257474
Alignment:
| Q |
134 |
aaaccaaaatctgaaacttttggcgtgaatttgtcatcttgcaaaacattgtgagggttgatgtcaaagtgaagaatt |
211 |
Q |
| |
|
|||||||||| || || |||||| || || |||||||| ||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9257397 |
aaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggattgatgtcaaagtgaagaatt |
9257474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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