View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_20 (Length: 513)
Name: NF0547_low_20
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 59 - 503
Target Start/End: Complemental strand, 40552093 - 40551649
Alignment:
| Q |
59 |
agtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcctatttatcttttcctagggcaatttttaaactaa |
158 |
Q |
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| T |
40552093 |
agtttgaacctaagcctgagttggcagatacttctaaggttttgaggagagttcttgccttgcgcttatttatcttttcctagggcaatttttaaactaa |
40551994 |
T |
|
| Q |
159 |
attatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40551993 |
attatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttctgtggtattattgttttcagttgtttagatcactctaacattgg |
40551894 |
T |
|
| Q |
259 |
gatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcataca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40551893 |
gatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatatctttgtttatgtattctatttattagcaggcataca |
40551794 |
T |
|
| Q |
359 |
aatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatcttgatttcagattcatttccgcagcagttgcatc |
458 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551793 |
aatcactaaatatggatagcttgtagcaccgagttttctatttcgagtatttttctaaccactatcttgatttcagattcatttccgcagcagttgcatc |
40551694 |
T |
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| Q |
459 |
aactttcgagacaacaagttgctattcgaccattcttggtctctg |
503 |
Q |
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| T |
40551693 |
aactttcgagacaacaagttgctattcgaccattcttggtttctg |
40551649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 313 - 503
Target Start/End: Complemental strand, 40569059 - 40568870
Alignment:
| Q |
313 |
gcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtattttt |
412 |
Q |
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||||||||||||| ||||| |||||||| | |||||||||||| |||||||| | ||||| |||| ||||||||||||||| |||| ||||||| |
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| T |
40569059 |
gcattcatgtctt-gtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgcagcactgagttttctgtttcacatattttt |
40568961 |
T |
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| Q |
413 |
ctaaccactatcttgatttcagattcatttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtctctg |
503 |
Q |
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||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| |
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| T |
40568960 |
ctaaccactatcttgatttcagattcacttccacagcatttgcatcaactttcgagacaacaagctgctactcgtccattcttggtttctg |
40568870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 40569173 - 40569110
Alignment:
| Q |
148 |
ttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagtt |
213 |
Q |
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| T |
40569173 |
ttttaaactaaattata--tatgcagtttttgaaaaattagtcatataccgactgtttcagtagtt |
40569110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 185 - 427
Target Start/End: Complemental strand, 15110539 - 15110297
Alignment:
| Q |
185 |
ttaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatactta |
284 |
Q |
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||||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
15110539 |
ttaattatatacggattgttttaatagttttgtggtattattgtttttggttgttcggattactctaaaattgggatagggtgacaaatttacgtactta |
15110440 |
T |
|
| Q |
285 |
aatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtag |
384 |
Q |
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|| ||||||||||||| || |||||| |||||| || | |||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||| |
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| T |
15110439 |
catttgtactcttatgcgtgaatatttcatattcatctcgtcgtttatgtattctattcaatagcagccatacaaatcactaaatatggatggcttgtag |
15110340 |
T |
|
| Q |
385 |
cactgagttttctatttcgagtatttttctaaccactatcttg |
427 |
Q |
| |
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||| ||||| ||||| | |||| |||| ||||| ||||||||| |
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| T |
15110339 |
caccgagttgtctatcttgagtgttttcctaacgactatcttg |
15110297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 15109895 - 15110018
Alignment:
| Q |
219 |
gtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattc |
318 |
Q |
| |
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||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| | | ||| |||||| ||||| |
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| T |
15109895 |
gtattcttgtttttggttgtttggattactctaacattgggatagggtgacaaatttacgtacttaaatttgtactctaacgagtggatatttcacattc |
15109994 |
T |
|
| Q |
319 |
atgtctttgtttatgtattctatt |
342 |
Q |
| |
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|| |||| |||||||||||||||| |
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| T |
15109995 |
atctcttcgtttatgtattctatt |
15110018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 354 - 498
Target Start/End: Original strand, 15110059 - 15110203
Alignment:
| Q |
354 |
atacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatcttgatttcagattcatttccgcagcagtt |
453 |
Q |
| |
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||||||||||||||||||| || ||| ||| ||||||||| || ||||| ||||||||||||| ||||||||||||||| |||| |||| || ||||| |
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| T |
15110059 |
atacaaatcactaaatatgaatgacttatagaactgagtttcctgtttcgcgtatttttctaacgactatcttgatttcaaattctcttccacatcagtt |
15110158 |
T |
|
| Q |
454 |
gcatcaactttcgagacaacaagttgctattcgaccattcttggt |
498 |
Q |
| |
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|| ||| ||||| |||||||||||| ||| || ||| |||||||| |
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| T |
15110159 |
gcttcatctttcaagacaacaagtttctactcaacccttcttggt |
15110203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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