View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_23 (Length: 506)
Name: NF0547_low_23
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Original strand, 8457487 - 8457973
Alignment:
| Q |
7 |
gaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8457487 |
gaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaag |
8457586 |
T |
|
| Q |
107 |
ggtaagatgtgctacactacatctttagaatattgagggttttcctttg-cttcttgctttatatattcaggagttatatatagttttatacctcaattc |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8457587 |
ggtaagatgtgctacactacacctttagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacctcaattc |
8457686 |
T |
|
| Q |
206 |
tgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaac |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457687 |
tgtcatttgtagatattcaccaaaatatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaactacaac |
8457786 |
T |
|
| Q |
306 |
ggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457787 |
ggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcct |
8457886 |
T |
|
| Q |
406 |
ttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggatt |
492 |
Q |
| |
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| T |
8457887 |
ttcaatatttctttttcattttacactcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggatt |
8457973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 6827843 - 6827367
Alignment:
| Q |
7 |
gaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaag |
106 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
6827843 |
gaccacactcaagattgtgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaag |
6827745 |
T |
|
| Q |
107 |
ggtaagatgtgctacactacatctttagaatattgagggttttccttt--gcttcttgctttatatattcaggagttatatatagttttatac--ctcaa |
202 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| ||||||||||||||||| |||||||||| || ||||| |
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|
| T |
6827744 |
ggtaagatgtgctacac-----cttttgaaaattgattgttttccttttggcttcttactttatatattcaggag----ctatagttttacacctctcaa |
6827654 |
T |
|
| Q |
203 |
ttctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactac |
302 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||| |
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|
| T |
6827653 |
ttctgtcatttgtagctattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactac |
6827554 |
T |
|
| Q |
303 |
aacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
6827553 |
aacggttctactttggactataaccaaggta---tgcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattac |
6827457 |
T |
|
| Q |
403 |
cctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggatt |
492 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |
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|
| T |
6827456 |
cctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggatt |
6827367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 492
Target Start/End: Original strand, 9822301 - 9822777
Alignment:
| Q |
7 |
gaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaag |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
9822301 |
gaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgccataatgtgggctttcaggattttcgttttgattatgc-aaag |
9822399 |
T |
|
| Q |
107 |
ggtaagatgtgctacactacatctttagaatattgagggttttccttt--gcttcttgctttatatattcaggagttatatatagttttatac--ctcaa |
202 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| ||||||||||||||||| |||||||||| || ||||| |
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|
| T |
9822400 |
ggtaagatgtgctacac-----cttttgaaaattgattgttttccttttggcttcttactttatatattcaggag----ctatagttttacacctctcaa |
9822490 |
T |
|
| Q |
203 |
ttctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactac |
302 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
9822491 |
ttctgtcatttgtagctattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactac |
9822590 |
T |
|
| Q |
303 |
aacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
9822591 |
aacggttctactttggactataaccaaggta---tgcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattac |
9822687 |
T |
|
| Q |
403 |
cctttcaatatttctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggatt |
492 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
9822688 |
cctttcaatacttcttttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggatt |
9822777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 438
Target Start/End: Complemental strand, 27964486 - 27964065
Alignment:
| Q |
7 |
gaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaag |
106 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
27964486 |
gaccacactcaagattgtgtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgcaaa-g |
27964388 |
T |
|
| Q |
107 |
ggtaagatgtgctacactacatctttagaatattgagggttttccttt--gcttcttgctttatatattcaggagttatatatagttttatacctc--aa |
202 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||||||||||| |||| ||||||||||| || |
|
|
| T |
27964387 |
ggtaagatgtgctacac-----cttttgaatattgattgttttccttttggcttcttactttatatattcaggagctataa----ttttatacctctcaa |
27964297 |
T |
|
| Q |
203 |
ttctgtcattggtagatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactac |
302 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
27964296 |
ttctgtcatttgtagctattcacctaaatatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttgcaactac |
27964197 |
T |
|
| Q |
303 |
aacggttctactttggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27964196 |
aacggttctactttggactataaccaaggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaatacattac |
27964101 |
T |
|
| Q |
403 |
cctttcaatatttctttttcattttacactcagctc |
438 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
27964100 |
cctttcaatacttcttttgcattgtacacttagctc |
27964065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
357 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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