View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_24 (Length: 502)
Name: NF0547_low_24
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_24 |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 33 - 502
Target Start/End: Original strand, 47074685 - 47075168
Alignment:
| Q |
33 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgc |
132 |
Q |
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| T |
47074685 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtggatcgcatgacaaaatttgcgc |
47074784 |
T |
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| Q |
133 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta-------- |
224 |
Q |
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| T |
47074785 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatctataaagtat |
47074884 |
T |
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| Q |
225 |
------gaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtacatgatttccactgctattgaaatc |
318 |
Q |
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| T |
47074885 |
gaactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtgcatgatttccactgctattgaaatc |
47074984 |
T |
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| Q |
319 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47074985 |
aaaacactcaataagtaacggattatcctgcatagagaaagaaattaaaaaaatgtcagagtaatctatatatgaatatgatgtaacatcagacatgttg |
47075084 |
T |
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| Q |
419 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattgtggatttaaattgttgt |
502 |
Q |
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| T |
47075085 |
caaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgt |
47075168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
79 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
178 |
Q |
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||||||| |||||||||||||| |||||| | ||| ||||||||||||| | ||||||||||| | | ||||||||||||||||||||| || ||| || |
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| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
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| Q |
179 |
cagtttactgttgccaacaaacattgatgtcact |
212 |
Q |
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| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 497
Target Start/End: Original strand, 47057258 - 47057361
Alignment:
| Q |
394 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattgtggattta |
493 |
Q |
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| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
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| Q |
494 |
aatt |
497 |
Q |
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|||| |
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| T |
47057358 |
aatt |
47057361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 47056945 - 47057031
Alignment:
| Q |
268 |
tataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattatcctgcataga |
354 |
Q |
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| T |
47056945 |
tataatttgacattacccgattagtacatgattgccgctgatattgaaatcaaaacactcgataactaatggagtatcctgcataga |
47057031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 67 - 502
Target Start/End: Complemental strand, 18230687 - 18230231
Alignment:
| Q |
67 |
gatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgc |
166 |
Q |
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|||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
18230687 |
gattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgacaaaatttgcgccttttttttcttggtatagcttttcaaggtctgc |
18230588 |
T |
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| Q |
167 |
tactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcat------------------ctagaaagtgtaaagcctaaagaagtt |
248 |
Q |
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| T |
18230587 |
tactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatctatatatagtatatggactagaaagtgtaaagcctaaaaatgtt |
18230488 |
T |
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| Q |
249 |
taggctaaac----aaaaagctatataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacactcaataagtaacggattat |
344 |
Q |
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|||||||||| | ||| | ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| || ||| ||| |
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| T |
18230487 |
taggctaaacgaaaataaaacaatataatttgacattacccgataagtacatgattgccgctgctattgaaatcaaaacactcaataagcaatggagtat |
18230388 |
T |
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| Q |
345 |
cctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttacttta |
444 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||||| |
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| T |
18230387 |
cctgcatagagaaagaaatt-aaaaaatgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttacttta |
18230289 |
T |
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| Q |
445 |
cttccaaactgctggaaattaagacaaagtggtctccattgtggatttaaattgttgt |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18230288 |
cttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgt |
18230231 |
T |
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