View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_27 (Length: 475)

Name: NF0547_low_27
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_27
NF0547_low_27
[»] chr1 (10 HSPs)
chr1 (277-475)||(6723735-6723933)
chr1 (319-444)||(34703537-34703662)
chr1 (337-463)||(10686221-10686347)
chr1 (294-365)||(8397850-8397921)
chr1 (324-367)||(29642160-29642203)
chr1 (324-367)||(44889203-44889246)
chr1 (399-452)||(12688177-12688230)
chr1 (398-463)||(15259398-15259463)
chr1 (324-361)||(33134298-33134335)
chr1 (339-375)||(32160008-32160044)
[»] chr2 (8 HSPs)
chr2 (278-475)||(44735999-44736196)
chr2 (282-461)||(39117300-39117479)
chr2 (280-475)||(18766550-18766745)
chr2 (312-471)||(9840678-9840837)
chr2 (312-475)||(27708210-27708373)
chr2 (312-384)||(30505627-30505699)
chr2 (312-361)||(18948707-18948756)
chr2 (339-375)||(21936732-21936768)
[»] chr4 (10 HSPs)
chr4 (30-184)||(29099166-29099336)
chr4 (399-475)||(20510392-20510468)
chr4 (411-471)||(53650461-53650521)
chr4 (411-471)||(43001720-43001780)
chr4 (399-463)||(29969843-29969907)
chr4 (398-444)||(8830994-8831040)
chr4 (324-366)||(13157355-13157397)
chr4 (398-452)||(52577982-52578036)
chr4 (146-180)||(55118088-55118122)
chr4 (312-364)||(8813912-8813964)
[»] chr7 (10 HSPs)
chr7 (333-458)||(4997984-4998108)
chr7 (399-475)||(41529389-41529465)
chr7 (339-471)||(47543365-47543497)
chr7 (303-366)||(11884269-11884332)
chr7 (398-463)||(38153903-38153968)
chr7 (324-375)||(16560015-16560066)
chr7 (324-375)||(16605596-16605647)
chr7 (146-180)||(36610135-36610169)
chr7 (411-445)||(42978125-42978159)
chr7 (398-450)||(31030418-31030470)
[»] chr5 (9 HSPs)
chr5 (399-475)||(12863512-12863588)
chr5 (399-475)||(12831537-12831613)
chr5 (314-444)||(19315058-19315188)
chr5 (300-361)||(8487950-8488011)
chr5 (324-366)||(7961277-7961319)
chr5 (324-366)||(17971989-17972031)
chr5 (298-368)||(31124161-31124231)
chr5 (324-368)||(6612298-6612342)
chr5 (399-463)||(31706461-31706525)
[»] chr6 (9 HSPs)
chr6 (289-472)||(12688076-12688259)
chr6 (289-472)||(27105162-27105343)
chr6 (289-472)||(27146971-27147152)
chr6 (339-471)||(32196845-32196977)
chr6 (294-361)||(10303299-10303366)
chr6 (399-448)||(2682761-2682810)
chr6 (309-366)||(17292898-17292955)
chr6 (136-180)||(2595379-2595423)
chr6 (398-450)||(7824186-7824238)
[»] chr3 (9 HSPs)
chr3 (310-368)||(3694854-3694912)
chr3 (400-475)||(33692924-33692999)
chr3 (408-475)||(36803166-36803233)
chr3 (324-368)||(35503851-35503895)
chr3 (398-453)||(9601774-9601829)
chr3 (324-358)||(20848277-20848311)
chr3 (294-375)||(3459239-3459320)
chr3 (411-444)||(3459356-3459389)
chr3 (309-366)||(25408674-25408731)
[»] chr8 (4 HSPs)
chr8 (411-475)||(5048497-5048561)
chr8 (303-444)||(38738327-38738468)
chr8 (398-463)||(37929105-37929170)
chr8 (399-471)||(8462541-8462613)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 277 - 475
Target Start/End: Complemental strand, 6723933 - 6723735
Alignment:
Q  277 ttattggtggctcatcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcac 376  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6723933 ttattggtggcacatcaaaggtgtgtcaatccatcttacaggttatatgatttgcgactatatgggaaatatggaaagaaagaaacaacaggttgttcac 6723834  T
Q  377 agacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6723833 agacaaaatttatacggtaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttca 6723735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 444
Target Start/End: Complemental strand, 34703662 - 34703537
Alignment:
Q  319 ttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaagattaa 418  Q
    |||| |||| ||| ||||| ||||||||||||||||||||||| |||| ||| |||||||| | ||  |   || |   ||||||||| || ||||||||    
T  34703662 ttatctggtatgctactgtctgggaaatatggaaagaaagaaataacatgttattcacagatagaacatgctcggttcttcaggtggttgataagattaa 34703563  T
Q  419 gtccctcacttttatgtggttgaagg 444  Q
    ||||||||||||||||||||||||||    
T  34703562 gtccctcacttttatgtggttgaagg 34703537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 463
Target Start/End: Complemental strand, 10686347 - 10686221
Alignment:
Q  337 tatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtg 436  Q
    |||||||||| |||||| ||||||| || || ||||| |||||||||| ||   || | ||||||||||| || |||||||||||||| || |||  |||    
T  10686347 tatgggaaatctggaaataaagaaataatagattgtttacagacaaaacttgctcggtcactcaggtggtggataagattaagtcccttacatttgcgtg 10686248  T
Q  437 gttgaaggtgaagtttaatactcttcc 463  Q
    |||||||| |||||||| || ||||||    
T  10686247 gttgaaggcgaagtttactaatcttcc 10686221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 8397921 - 8397850
Alignment:
Q  294 aaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaac 365  Q
    |||||||| ||||| ||||| || || || |||||||| ||||| ||||||||||||||| |||||||||||    
T  8397921 aaggtgcggcaatctatcttgcatttgatttggtttgctactgtgtgggaaatatggaaataaagaaacaac 8397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 29642203 - 29642160
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacag 367  Q
    |||||||| ||| | |||||||||||||||||||||||||||||    
T  29642203 tggtttgctactatttgggaaatatggaaagaaagaaacaacag 29642160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 44889246 - 44889203
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacag 367  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||    
T  44889246 tggtttgctactgtttgggaaatatggaaagaaagaaataacag 44889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 12688177 - 12688230
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagttt 452  Q
    |||||||| || ||||||||||  || ||||||| |||||||||||||||||||    
T  12688177 caggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagttt 12688230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 15259398 - 15259463
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcc 463  Q
    ||||||||||||||||||||| || ||  |||||| ||||||||||| ||||| || | |||||||    
T  15259398 tcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcc 15259463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 33134298 - 33134335
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaa 361  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  33134298 tggtttgctactgtttgggaaatatggaaagaaagaaa 33134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 32160008 - 32160044
Alignment:
Q  339 tgggaaatatggaaagaaagaaacaacaggttgttca 375  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  32160008 tgggaaatatggaaggaaagaaacaataggttgttca 32160044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 278 - 475
Target Start/End: Complemental strand, 44736196 - 44735999
Alignment:
Q  278 tattggtggctcatcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcaca 377  Q
    ||||| ||||||||||||||| | ||| |||||||||| | ||||||| ||||  ||||| |||||||| | |||||||||||| |||||||| || |||    
T  44736196 tattgctggctcatcaaaggttcctcagtccatcttactggttatatgatttgttactgtttgggaaatttagaaagaaagaaataacaggttttttaca 44736097  T
Q  378 gacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||| |   || ||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  44736096 gacaaaatatgctcggtagttcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttca 44735999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 461
Target Start/End: Original strand, 39117300 - 39117479
Alignment:
Q  282 ggtggctcatcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagaca 381  Q
    |||||| |||||||||| |||||||| || |||||| |||| |||| ||| ||| | |||||||| |||||||||||||| ||||||||||| ||   ||    
T  39117300 ggtggcgcatcaaaggttcgtcaatcaattttacaggttatttggtatgctactatgtgggaaatctggaaagaaagaaataacaggttgtttaccatca 39117399  T
Q  382 aaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactctt 461  Q
    ||  ||   || | ||||||||||| || ||||||||||||||||| ||||||||||||| || ||| |||| |||||||    
T  39117400 aatcttgctcggtgactcaggtggtggataagattaagtccctcacatttatgtggttgagggagaaatttactactctt 39117479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 475
Target Start/End: Original strand, 18766550 - 18766745
Alignment:
Q  280 ttggtggctcatcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacaga 379  Q
    |||| ||| |||||||||| || ||||| || |||||| |||| |||| ||| ||| | || ||||| | |||||||||||||||||||||||| |||||    
T  18766550 ttggcggcgcatcaaaggttcgccaatcaattttacaggttatttggtatgctactatgtgagaaatctagaaagaaagaaacaacaggttgtttacaga 18766649  T
Q  380 caaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    ||||| ||    | | || || |||||  | ||||||||||||||||| ||||||||||||| || ||| |||| || |||||| || ||||||||    
T  18766650 caaaactttcttggtgacacaagtggtgaataagattaagtccctcacatttatgtggttgatggcgaaatttactaatcttccctttaattttca 18766745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 471
Target Start/End: Original strand, 9840678 - 9840837
Alignment:
Q  312 ttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgaca 411  Q
    |||||| ||||||||||||| ||  | |||||||| |||||||||||||| |||||| | |||||| |||||   |   || ||| ||| ||||| || |    
T  9840678 ttacaggttatatggtttgctaccatttgggaaatttggaaagaaagaaataacaggatattcacaaacaaatcatgctcggtaattcaagtggttgata 9840777  T
Q  412 agattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaatt 471  Q
    ||||||| || ||| |||||||||| |||||||  || |||  ||||||||| |||||||    
T  9840778 agattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaatt 9840837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 475
Target Start/End: Complemental strand, 27708373 - 27708210
Alignment:
Q  312 ttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgaca 411  Q
    |||||| ||||||||||| | ||  | || ||||| |||||||||||||| ||||| || || ||||||||||  |    | ||| ||||||||| || |    
T  27708373 ttacaggttatatggttttctaccatctgagaaatctggaaagaaagaaataacagattatttacagacaaaacatgcttggtaattcaggtggttgata 27708274  T
Q  412 agattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||||| ||| |||||| |||||| |||| ||| |||  ||||||||| |||||| ||||    
T  27708273 agattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttca 27708210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 30505627 - 30505699
Alignment:
Q  312 ttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaa 384  Q
    |||||| |||| |||||||| ||||| || ||||| |||||||||||||| |||||| | |||| ||||||||    
T  30505627 ttacaggttatttggtttgctactgtttgagaaatttggaaagaaagaaataacaggctattcaaagacaaaa 30505699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 18948707 - 18948756
Alignment:
Q  312 ttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaa 361  Q
    |||||| |||| | |||||| || ||||||||||||||||||||||||||    
T  18948707 ttacaggttatttagtttgcaacggtatgggaaatatggaaagaaagaaa 18948756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 21936768 - 21936732
Alignment:
Q  339 tgggaaatatggaaagaaagaaacaacaggttgttca 375  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  21936768 tgggaaatatggaaagaaagaaataacaggttattca 21936732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 29099166 - 29099336
Alignment:
Q  30 aggagaaggttacttccatttgctcaatcaaatattgaagcttcaattcaatgattactat---acaaatcaatagaccctataccatatatat----ta 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||||   |||||| ||||||||    ||    
T  29099166 aggagaaggttacttccatttgctcaatcaaatattgaagcttgaattcaatgattactactagacaaatcaatagtatctatactatatatatataata 29099265  T
Q  123 aagaaaacaactatt--gg-----gctaaa--tttttctctttttaaaaatacattcaattttcaattttg 184  Q
    |||| ||||||||||  ||     ||||||  ||||||||||| |||||||||||||||||||||||||||    
T  29099266 aagataacaactatttcggctcttgctaaatttttttctctttctaaaaatacattcaattttcaattttg 29099336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 20510392 - 20510468
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||| || |||||||||||| || |||||||||||||||||||||| ||||| || ||||| |||||||||||    
T  20510392 caggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttca 20510468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 53650521 - 53650461
Alignment:
Q  411 aagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaatt 471  Q
    ||||||||||| || ||||||||||||||||||| |||||||| ||| |||||||||||||    
T  53650521 aagattaagtcgctaacttttatgtggttgaaggcgaagtttactacccttcctttcaatt 53650461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 43001720 - 43001780
Alignment:
Q  411 aagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaatt 471  Q
    ||||||||||| || || |||||||||||||||| |||||||| |||||||| ||||||||    
T  43001720 aagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaatt 43001780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 29969843 - 29969907
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcc 463  Q
    |||||||| || |||| ||||||||  ||||||||||||||||||| ||| |||| |||||||||    
T  29969843 caggtggttgataagaataagtcccatacttttatgtggttgaaggcgaaatttactactcttcc 29969907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 8831040 - 8830994
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaagg 444  Q
    ||||||||| ||||| |||||||| ||||||||||||| ||||||||    
T  8831040 tcaggtggttgacaaaattaagtcgctcacttttatgtagttgaagg 8830994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 13157355 - 13157397
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    |||||||| || || ||||||||||||||||||||||||||||    
T  13157355 tggtttgcaacagtgtgggaaatatggaaagaaagaaacaaca 13157397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 52577982 - 52578036
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagttt 452  Q
    ||||||| | || ||||||||||||||  |||||| |||||||||||||||||||    
T  52577982 tcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagttt 52578036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 55118122 - 55118088
Alignment:
Q  146 tttttctctttttaaaaatacattcaattttcaat 180  Q
    ||||||||||| |||||||||||||||||||||||    
T  55118122 tttttctctttctaaaaatacattcaattttcaat 55118088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 8813912 - 8813964
Alignment:
Q  312 ttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaa 364  Q
    |||||| |||| |||||||| || || |||||||| |||||||||||||||||    
T  8813912 ttacaggttatttggtttgcaacagtctgggaaatttggaaagaaagaaacaa 8813964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 458
Target Start/End: Complemental strand, 4998108 - 4997984
Alignment:
Q  333 actgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcactttta 432  Q
    ||||||||| |||| |||||||||||||| ||||  ||||||||||| |||| ||   || ||| ||||||||| || ||||||||||||||||||||||    
T  4998108 actgtatggaaaatctggaaagaaagaaataacaa-ttgttcacagataaaacttgcccgataattcaggtggtggataagattaagtccctcactttta 4998010  T
Q  433 tgtggttgaaggtgaagtttaatact 458  Q
    |||||||||||| ||| |||| ||||    
T  4998009 tgtggttgaaggcgaaatttactact 4997984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 41529389 - 41529465
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||| || |||||||||||| || ||||||||||||||||| |||| ||||| || ||||| |||||||||||    
T  41529389 caggtggttgataagattaagtccatctcttttatgtggttgaagatgaaatttaacacgcttcccttcaattttca 41529465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 471
Target Start/End: Original strand, 47543365 - 47543497
Alignment:
Q  339 tgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggt 438  Q
    |||||||||||||| ||||||||||| |||||||| |  | ||||  || | || | |  ||||||||||||||||||||||| ||  |||||| |||||    
T  47543365 tgggaaatatggaaggaaagaaacaataggttgtttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggt 47543464  T
Q  439 tgaaggtgaagtttaatactcttcctttcaatt 471  Q
    |||||  |||||||| | ||||||| |||||||    
T  47543465 tgaagacgaagtttagttctcttcccttcaatt 47543497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 11884269 - 11884332
Alignment:
Q  303 caatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    ||||| || |||||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  11884269 caatctattttacaggttatttggtttgcgactgtatgggaaatttggaaggaaaggaacaaca 11884332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 38153903 - 38153968
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcc 463  Q
    |||||||||||| | ||||||||| ||| |||||| ||||||||||||||| |||  |||||||||    
T  38153903 tcaggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttcc 38153968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Original strand, 16560015 - 16560066
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttca 375  Q
    |||||||| || || ||||||||||||||||||||||| |||||||| ||||    
T  16560015 tggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattca 16560066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 16605647 - 16605596
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttca 375  Q
    |||||||| || || ||||||||||||||||||||||| |||||||| ||||    
T  16605647 tggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattca 16605596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 36610169 - 36610135
Alignment:
Q  146 tttttctctttttaaaaatacattcaattttcaat 180  Q
    |||||||||||| ||||||||||||||||||||||    
T  36610169 tttttctcttttcaaaaatacattcaattttcaat 36610135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 42978159 - 42978125
Alignment:
Q  411 aagattaagtccctcacttttatgtggttgaaggt 445  Q
    |||||||||||||||||||| ||||||||||||||    
T  42978159 aagattaagtccctcactttcatgtggttgaaggt 42978125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 31030470 - 31030418
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagt 450  Q
    ||||||||| |||||||||||||| ||  | |||| |||||||||||||||||    
T  31030470 tcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagt 31030418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 12863588 - 12863512
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||| || |||||||||||| || |||||||||||||||||||||| ||||| || ||||| |||||||||||    
T  12863588 caggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttca 12863512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 12831613 - 12831537
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    |||||||| || |||||||||||  || |||||||||||||||||||||| ||||| || ||||| |||||||||||    
T  12831613 caggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttca 12831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 444
Target Start/End: Complemental strand, 19315188 - 19315058
Alignment:
Q  314 acagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaag 413  Q
    |||| |||| |||||||| || || |||||||| |||||||||||||| |||||||| |||| || ||||   |   || |||  |||||||| || |||    
T  19315188 acagattatttggtttgctaccgtttgggaaatttggaaagaaagaaataacaggttattcaaaggcaaagaatggtcggtaatgcaggtggttgataag 19315089  T
Q  414 attaagtccctcacttttatgtggttgaagg 444  Q
    |||||||| ||||| ||||||||||||||||    
T  19315088 attaagtcactcacatttatgtggttgaagg 19315058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 8487950 - 8488011
Alignment:
Q  300 cgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaa 361  Q
    |||||||| ||| ||||| |||| |||||||| || || |||||||||||||||||||||||    
T  8487950 cgtcaatcaatcatacaggttatttggtttgcaacagtgtgggaaatatggaaagaaagaaa 8488011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 7961319 - 7961277
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    |||||||||||| | |||||||||||||| |||||||||||||    
T  7961319 tggtttgcgactatgtgggaaatatggaaggaaagaaacaaca 7961277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 17972031 - 17971989
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||    
T  17972031 tggtttgctactgtgtgggaaatatggaaagaaagaaataaca 17971989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 31124161 - 31124231
Alignment:
Q  298 tgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacagg 368  Q
    |||| ||||| ||||| || || || |||||||| ||||| |||||||| |||||||||||||| ||||||    
T  31124161 tgcgacaatctatcttgcatttgatttggtttgctactgtgtgggaaatctggaaagaaagaaataacagg 31124231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 6612298 - 6612342
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacagg 368  Q
    |||||||| ||||| || |||||||||||||||||||| ||||||    
T  6612298 tggtttgctactgtgtgagaaatatggaaagaaagaaataacagg 6612342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 31706525 - 31706461
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcc 463  Q
    ||||||||||||||||||||||| ||  |||||| |||||| |||| ||||| || | |||||||    
T  31706525 caggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcc 31706461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 472
Target Start/End: Original strand, 12688076 - 12688259
Alignment:
Q  289 catcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaattta 388  Q
    |||||||| | |||||||| || |||||| |||| |||| |||  || | |||||||| ||||||||| |||| ||||||||||| |||| ||||  ||     
T  12688076 catcaaagtttcgtcaatcaattttacaggttatttggtatgctgctatgtgggaaatctggaaagaacgaaataacaggttgtttacagtcaaatcttg 12688175  T
Q  389 tacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattt 472  Q
      || |  | ||| |||| || ||||||||||||||||| ||| |||||||||||| ||| |||| ||||||||| || |||||    
T  12688176 ctcggtgtcgcagatggtggataagattaagtccctcacatttgtgtggttgaaggagaaatttactactcttccctttaattt 12688259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 472
Target Start/End: Original strand, 27105162 - 27105343
Alignment:
Q  289 catcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaattta 388  Q
    |||||||||| |||||| | || || ||| |||| |||| ||| |||  ||||||||| ||||||||| |||| ||||||||||| || | ||||  ||     
T  27105162 catcaaaggttcgtcaagcaattttgcaggttatttggtatgctact--atgggaaatctggaaagaacgaaataacaggttgtttacggtcaaatcttg 27105259  T
Q  389 tacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattt 472  Q
      || |  | |||||||| || ||||||||||||||||| ||| |||||||||||| |||||||| |||| |||| || |||||    
T  27105260 ctcggtgtcacaggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaattt 27105343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 472
Target Start/End: Original strand, 27146971 - 27147152
Alignment:
Q  289 catcaaaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaattta 388  Q
    |||||||||| |||||| | || || ||| |||| |||| ||| |||  ||||||||| ||||||||| |||| ||||||||||| || | ||||  ||     
T  27146971 catcaaaggttcgtcaagcaattttgcaggttatttggtatgctact--atgggaaatctggaaagaacgaaataacaggttgtttacggtcaaatcttg 27147068  T
Q  389 tacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattt 472  Q
      || |  | |||||||| || ||||||||||||||||| ||| |||||||||||| |||||||| |||| |||| || |||||    
T  27147069 ctcggtgtcacaggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaattt 27147152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 471
Target Start/End: Complemental strand, 32196977 - 32196845
Alignment:
Q  339 tgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcaggtggtcgacaagattaagtccctcacttttatgtggt 438  Q
    |||||||||||||| ||||||||||| |||||||| |  | ||||  || | || | |  |||||||||||| |||||||||| || |||||||  ||||    
T  32196977 tgggaaatatggaaggaaagaaacaataggttgtttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggt 32196878  T
Q  439 tgaaggtgaagtttaatactcttcctttcaatt 471  Q
    |||||  |||||||| | ||||||| |||||||    
T  32196877 tgaagacgaagtttagttctcttcccttcaatt 32196845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 10303366 - 10303299
Alignment:
Q  294 aaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaa 361  Q
    |||||||| ||||| ||||| ||| |||| |||||||| | ||| |||||||||||||||||||||||    
T  10303366 aaggtgcgacaatctatcttgcaggttatttggtttgctattgtgtgggaaatatggaaagaaagaaa 10303299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 2682761 - 2682810
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaa 448  Q
    ||||| ||||||||||||||||||||  |||||| |||||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaa 2682810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 17292955 - 17292898
Alignment:
Q  309 atcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    ||||| ||| |||| |||||||| || ||||||||||| |||||||||||||| ||||    
T  17292955 atctttcaggttatttggtttgcaaccgtatgggaaatttggaaagaaagaaataaca 17292898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 2595423 - 2595379
Alignment:
Q  136 ttgggctaaatttttctctttttaaaaatacattcaattttcaat 180  Q
    ||||||| | |||||||||||||||||||||  ||||||||||||    
T  2595423 ttgggctgattttttctctttttaaaaataccctcaattttcaat 2595379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 7824238 - 7824186
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagt 450  Q
    |||||||||||||||||||||||| ||  | |||| ||||||||||| |||||    
T  7824238 tcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagt 7824186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 368
Target Start/End: Complemental strand, 3694912 - 3694854
Alignment:
Q  310 tcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacagg 368  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  3694912 tcttacaggttatatggtttgcatctgtatgggaaatttggaaagaaagaaacaacagg 3694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 33692999 - 33692924
Alignment:
Q  400 aggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    ||||||| || |||||||||||| || |||||||||||||||||||||| ||||| || ||||| ||||| |||||    
T  33692999 aggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaactttca 33692924  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 475
Target Start/End: Original strand, 36803166 - 36803233
Alignment:
Q  408 gacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    ||||||||||| || || ||||||||||||||||||| ||||||||  ||| ||||||||||||||||    
T  36803166 gacaagattaaatcgcttacttttatgtggttgaaggcgaagtttaccactattcctttcaattttca 36803233  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 35503851 - 35503895
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaagaaacaacagg 368  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||    
T  35503851 tggtttgctactgtttgggaaatatggaaagaaagaaataacagg 35503895  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 9601829 - 9601774
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagttta 453  Q
    ||||||| | ||||| |||||||||||||| ||||||||||||||||  |||||||    
T  9601829 tcaggtgtttgacaacattaagtccctcacgtttatgtggttgaaggcaaagttta 9601774  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 20848311 - 20848277
Alignment:
Q  324 tggtttgcgactgtatgggaaatatggaaagaaag 358  Q
    |||||||| ||||||||||||||||||||||||||    
T  20848311 tggtttgcaactgtatgggaaatatggaaagaaag 20848277  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 3459239 - 3459320
Alignment:
Q  294 aaggtgcgtcaatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttca 375  Q
    |||| |||||| |||||| | ||| |||| |||||||| ||  | ||| |||| ||||||||||||||||||||||| ||||    
T  3459239 aaggcgcgtcattccatcattcaggttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattca 3459320  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Original strand, 3459356 - 3459389
Alignment:
Q  411 aagattaagtccctcacttttatgtggttgaagg 444  Q
    |||||||||||||||||||| |||||||||||||    
T  3459356 aagattaagtccctcactttcatgtggttgaagg 3459389  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 25408674 - 25408731
Alignment:
Q  309 atcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaaca 366  Q
    ||||||||| |||| |||||||| || || |||||||| |||||||||||||| ||||    
T  25408674 atcttacaggttatttggtttgcaaccgtgtgggaaatctggaaagaaagaaataaca 25408731  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 5048497 - 5048561
Alignment:
Q  411 aagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaattttca 475  Q
    ||||||||| ||||| |||||||||||||||||||||| || ||||| ||||| ||||| |||||    
T  5048497 aagattaagcccctctcttttatgtggttgaaggtgaaattaaatacgcttcccttcaactttca 5048561  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 38738327 - 38738468
Alignment:
Q  303 caatccatcttacagtttatatggtttgcgactgtatgggaaatatggaaagaaagaaacaacaggttgttcacagacaaaatttatacgctaactcagg 402  Q
    |||||||| |||||| | || ||||||||  | ||||||||||| ||||||||||||||||| ||| | ||||  ||||||| || | |  |  | |||     
T  38738327 caatccattttacaggtcatttggtttgcatcggtatgggaaatttggaaagaaagaaacaataggattttcaacgacaaaaattgttctattccgcaga 38738426  T
Q  403 tggtcgacaagattaagtccctcacttttatgtggttgaagg 444  Q
    |||| || || ||||||||||| ||||||| |||||||||||    
T  38738427 tggtggataaaattaagtcccttacttttacgtggttgaagg 38738468  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 37929105 - 37929170
Alignment:
Q  398 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcc 463  Q
    |||||||||||| | ||||||||| ||| | |||| ||||||||||||||| |||  |||||||||    
T  37929105 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttcc 37929170  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 8462613 - 8462541
Alignment:
Q  399 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcttcctttcaatt 471  Q
    |||||||| || ||||||||||| ||||| || ||||||||||||| ||| |||  | ||||||| |||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaatt 8462541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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