View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_3 (Length: 749)
Name: NF0547_low_3
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 173 - 737
Target Start/End: Original strand, 56405844 - 56406414
Alignment:
| Q |
173 |
attaattaggtttatgataacaaataatcttcaactttgtatgtatgtatgtatttgtgacagatgactgggaaggataaagattacagatatatggcca |
272 |
Q |
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| T |
56405844 |
attaattaggtttatgataacaaataatcttcaactttgta----tgtatgtatttgtgacagatgactgggaaggataaagattacagatatatggcca |
56405939 |
T |
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| Q |
273 |
catctgatttgcttaatgaattgaccaaacctacttttagggctgatgctgatctcgaacttaaattgaaaaatataatcattcaacagcttgatgatgc |
372 |
Q |
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| T |
56405940 |
catctgatttgcttaatgaattgaccaaacctacttttagggctgatgctgatctcgaacttaaattgaaaaatataatcattcaacagcttgatgatgc |
56406039 |
T |
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| Q |
373 |
tgctggtgatgtttctggtcttgctgttaaatgtcttgctccattagtcaggaagatgaatgagtctagggttgttgaaatgactagtcaactctgtgac |
472 |
Q |
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| T |
56406040 |
tgctggtgatgtttctggtcttgctgttaaatgtcttgctccattagtcaggaagatgaatgagtctagggttgttgaaatgactagtcaactctgtgac |
56406139 |
T |
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| Q |
473 |
aaaatacttaatggcaaggatcagcatcgcgacactgctagcattgctttgaagactgttgttgctgaagtttctacccaatcccttgcacagtccattc |
572 |
Q |
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| T |
56406140 |
aaaatacttaatggcaaggatcagcatcgcgacactgctagcattgctttgaagactgttgttgctgaagtttctacccaatcccttgcacagtccattc |
56406239 |
T |
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| Q |
573 |
tctccattctatccccacaattgatcaaaggaattactgccaaagtaactaactaactaactaactcccttctcgtttatctac----------tttctt |
662 |
Q |
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| T |
56406240 |
tctccattctatccccacaattgatcaaaggaattactgccaaagtaactaactaactacctaactcccttctcgtttatctactttcctttcttttctt |
56406339 |
T |
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| Q |
663 |
tgtttcgcatgcttaacactgttgtacccttcacaggatatgaccacagagattaaatgtgaatgtctcgatatt |
737 |
Q |
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| T |
56406340 |
tgtttcacatgcttaacactgttgtacccttcacaggatatgaccacagagattaaatgtgaatgtctcgatatt |
56406414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 56405742 - 56405795
Alignment:
| Q |
71 |
gctgcttctgcaaatatggcgaacttagctttgcctggtattcttgaaaaggta |
124 |
Q |
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| T |
56405742 |
gctgcttctgcaaatatggcgaacttagctttgcctggtattcttgaaaaggta |
56405795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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