View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_31 (Length: 461)

Name: NF0547_low_31
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_31
NF0547_low_31
[»] chr2 (3 HSPs)
chr2 (28-450)||(3101460-3101882)
chr2 (268-305)||(34655224-34655261)
chr2 (265-309)||(40082495-40082539)
[»] chr8 (1 HSPs)
chr8 (265-334)||(11319482-11319551)
[»] chr4 (3 HSPs)
chr4 (256-325)||(34391991-34392062)
chr4 (256-309)||(31550730-31550783)
chr4 (255-283)||(26037141-26037169)
[»] chr1 (2 HSPs)
chr1 (265-323)||(33717198-33717256)
chr1 (265-309)||(6263005-6263049)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 28 - 450
Target Start/End: Original strand, 3101460 - 3101882
Alignment:
Q  28 cagatacgtggagctagcacaagcagcatttggtaagtttgtttacttgcatgccatcaattactttttctagctagttggtatcacaatttcacattgc 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  3101460 cagatacgtggagctagcacaagcagcatttggtaagtttgtttacttgcatgccatcaattactttttctagctagttggtatcacatattcacattgc 3101559  T
Q  128 ataaagagttacctaattaatgatgcaaaactgctttgtgacatatatcatataaaactgtttcctatatggctcaaagaacatgttagtcactcagaaa 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3101560 ataaagagttacctaattaacgatgcaaaactgctttgtgacatatatcatataaaactgtttcctatatggctcaaagaacatgttagtcactcagaaa 3101659  T
Q  228 cctagacaaaattggctgtacttcacagtcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacaca 327  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3101660 cctagacaaaattggctgtacttcacggtcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacaca 3101759  T
Q  328 tgctatctttgtggcgtagtaatgtttcgtttataatttctaccttgtattgcaggggaaagattaggagtatggctagctcttttcccaacagtttatt 427  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3101760 tgctatctttgtggcgtagtaatgtttcatttataatttctaccttgtattgcaggggaaagattaggagtatggctagctcttttcccaacagtttatt 3101859  T
Q  428 tatcagcaggaactgcaacagct 450  Q
    |||||||||||||||||||||||    
T  3101860 tatcagcaggaactgcaacagct 3101882  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 34655261 - 34655224
Alignment:
Q  268 ttctttgtttgcgtttatcgtatctgtttacttttgaa 305  Q
    |||||||||||||||| |||||||||||||||||||||    
T  34655261 ttctttgtttgcgtttttcgtatctgtttacttttgaa 34655224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 40082495 - 40082539
Alignment:
Q  265 gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag 309  Q
    ||||||||||||| |||||||| ||||||||  ||||||||||||    
T  40082495 gtgttctttgtttccgtttatcatatctgttgtcttttgaaccag 40082539  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 11319482 - 11319551
Alignment:
Q  265 gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaacacatgctatc 334  Q
    |||||||||| ||| |||| |||||||||||||||||||||| || |||  |||||||||||||| ||||    
T  11319482 gtgttctttgcttgtgtttttcgtatctgtttacttttgaactagggttgctattctaacacatgttatc 11319551  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 34391991 - 34392062
Alignment:
Q  256 tcaaatctcgtgt--tctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaaca 325  Q
    |||||||||||||  ||||||||| ||||| ||||||||| ||||||||||||| | ||| || ||||||||    
T  34391991 tcaaatctcgtgtcttctttgtttacgtttttcgtatctgcttacttttgaacctgagtttttgttctaaca 34392062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 31550783 - 31550730
Alignment:
Q  256 tcaaatctcgtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag 309  Q
    |||||||||||||||| ||| ||| ||| |||||| | ||||||||||||||||    
T  31550783 tcaaatctcgtgttctctgtctgcatttttcgtatatatttacttttgaaccag 31550730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 26037169 - 26037141
Alignment:
Q  255 gtcaaatctcgtgttctttgtttgcgttt 283  Q
    |||||||||||||||||||||||||||||    
T  26037169 gtcaaatctcgtgttctttgtttgcgttt 26037141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 33717256 - 33717198
Alignment:
Q  265 gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccagcgttattattctaa 323  Q
    ||||||| ||||||| ||| |||||||||||||||||||||| || ||| || ||||||    
T  33717256 gtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa 33717198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 6263005 - 6263049
Alignment:
Q  265 gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag 309  Q
    ||||||| ||||||||||| |||||||| ||| ||||||||||||    
T  6263005 gtgttctctgtttgcgtttttcgtatctattttcttttgaaccag 6263049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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