View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_35 (Length: 444)
Name: NF0547_low_35
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 436
Target Start/End: Original strand, 4154765 - 4155068
Alignment:
| Q |
133 |
ataaccaaaacattattttcctaataaccattgttatgataatttatgatatgattcttaattcccattgatgttaattttattcttgtgatttatttat |
232 |
Q |
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| T |
4154765 |
ataacgaaaacattattttcctaataaccattgttatgataatttatgatatgattcttaattcccatttatgttaattttattcttgtgaattatttat |
4154864 |
T |
|
| Q |
233 |
gttaatttaaatttgagccattgagggacgacaattgtttctccaaaatgtcttcttaatcttttttaattttcaattaacnnnnnnnattgttatttaa |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4154865 |
gttaatttaaatttgagccattgagggacgacaattgtttctccaaaatgtcttcttaatcttttttaattttcaattaactttttttattgttatttaa |
4154964 |
T |
|
| Q |
333 |
ttgcaagtaagtaattataaacatagattcttaaaacaattaggattttattggtggtcatgattcatatctaaatttttgtttgccatgagtcgagtat |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4154965 |
ttgcaagtaagtaattataaacatagattcttaaaacaattaggattttattggtggtcatgattcatatctaaatttttgtttgccatgagtcgagtat |
4155064 |
T |
|
| Q |
433 |
aatc |
436 |
Q |
| |
|
|||| |
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|
| T |
4155065 |
aatc |
4155068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 4156370 - 4156266
Alignment:
| Q |
97 |
actaaagagggacaccaatgcttaatgaaaagtcatataaccaaaacattattttcctaataaccattgttatgataatttatgatatgattcttaattc |
196 |
Q |
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||||||| ||| || || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||||||| || |
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| T |
4156370 |
actaaagtggggcatcagtgcttaatgaaaatccatataaccaaaatattattttcctaataacgattgttatggtcattaatgatatgattcttaaatc |
4156271 |
T |
|
| Q |
197 |
ccatt |
201 |
Q |
| |
|
||||| |
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|
| T |
4156270 |
ccatt |
4156266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 4154536 - 4154591
Alignment:
| Q |
86 |
tccaaagtgtgactaaagagggacaccaatgcttaatgaaaagtcatataaccaaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
4154536 |
tccaaagtgtgactaaagagggacaccaatgcttaatgaaaaatcatataatcaaa |
4154591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 4152880 - 4152929
Alignment:
| Q |
265 |
aattgtttctccaaaatgtcttcttaatc-ttttttaattttcaattaac |
313 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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|
| T |
4152880 |
aattgtttctccaaaatgtctttttaatctttttttaattttccattaac |
4152929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 983668 - 983631
Alignment:
| Q |
30 |
aatactgtcatgccatatttactatactagtcgtcctt |
67 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
983668 |
aatactgtcatgccatatttactatactagtcgtcctt |
983631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 988361 - 988324
Alignment:
| Q |
30 |
aatactgtcatgccatatttactatactagtcgtcctt |
67 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |
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|
| T |
988361 |
aatactgccatgccatatttactatactagtcgtcctt |
988324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 27929326 - 27929363
Alignment:
| Q |
30 |
aatactgtcatgccatatttactatactagtcgtcctt |
67 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
27929326 |
aatactgccatgccatatttactatactagtcgacctt |
27929363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 2001359 - 2001405
Alignment:
| Q |
30 |
aatactgtcatgccatatttactatactagtcgtcctttcttacaaa |
76 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
2001359 |
aatactgccatgccatatttactatactagtcgaccttctttacaaa |
2001405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 1996662 - 1996699
Alignment:
| Q |
30 |
aatactgtcatgccatatttactatactagtcgtcctt |
67 |
Q |
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||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
1996662 |
aatactgccatgccatatttactatactagtcgacctt |
1996699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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