View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_36 (Length: 443)
Name: NF0547_low_36
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 44472426 - 44472044
Alignment:
| Q |
7 |
tccaataatatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgctatatagaatcactaaataataagg |
106 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44472426 |
tccaagaaaatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgctatatagaatcactaaataataagg |
44472327 |
T |
|
| Q |
107 |
aacaaaggctattactaagttcttttttctccctatatttatgctttatcttccttatagcatatcacagttaatgttatatcatgcagttattacacca |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
44472326 |
aacaaaggctattactaagttctttcttctccctatatttatgctttattttccttatagcatatcacagataatgttatatcatgcagttattacacta |
44472227 |
T |
|
| Q |
207 |
aatgcattttccattgaaacacccacctctgttgtgtatattaagaagctatatttactagtannnnnnnnagaagcatcttactgcttcacgagctgct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44472226 |
aatgcattttccattgaaacacccacctctgttgtgtatattaagaagctatatttactagtattttttttagaagcatcttactgcttcacgagctgct |
44472127 |
T |
|
| Q |
307 |
ccatggcagcttcttgaaacatttcatacaacaaacaattattgaaacaaagataagaagctaaagtaatgacacatagaaag |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44472126 |
ccatggcagcttcttgaaacatttcatacaacaaacaattattgaaacaaagataagaagctaaagtaatgacacatagaaag |
44472044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 136 - 377
Target Start/End: Complemental strand, 22022221 - 22021982
Alignment:
| Q |
136 |
tccctatatttatgctttatcttccttatagcatatcacagttaatgttatatcatgcagttattacaccaaatgcattttccattgaaacacccacctc |
235 |
Q |
| |
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||||||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
22022221 |
tccctatatatatgtcttatttaccttatagcatatcacagttaatgttatatcatgcagttattggaccaaatgcattttccattgaaacacctacctc |
22022122 |
T |
|
| Q |
236 |
tgttgtgtatattaagaagctatatttactagtannnnnnnnagaagcatcttactgcttcacgagctgctccatggcagcttcttgaaacatttcatac |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
22022121 |
tgttgtgtatattaagaagctatatttattact--tttttgtggaagcatcttactgcctcccgagctgctccatggcagcttcttgaaacatttcatac |
22022024 |
T |
|
| Q |
336 |
aacaaacaattattgaaacaaagataagaagctaaagtaatg |
377 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
22022023 |
aacaaacaattattgaaatagagataagaagctaaagtaatg |
22021982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 220 - 388
Target Start/End: Original strand, 46949381 - 46949552
Alignment:
| Q |
220 |
ttgaaacacccacctctgttgtgtatattaagaagctatatttactagtannnnnnnnagaagcatcttactgcttcacgagctgctccatggcagcttc |
319 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||| |||||| |
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|
| T |
46949381 |
ttgaaacacatatctctgttgtgtatattaagaagctatatttactatt-tttttttcagaagcatcttactacctcacgagctgctccatgttagcttc |
46949479 |
T |
|
| Q |
320 |
ttgaaacatttcatac----aacaaacaattattgaaacaaagataagaagctaaagtaatgacacatagaaa |
388 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
46949480 |
ttgaaacatttcatacaagaaacaaacaattattgaaacagagataagaagctaaagtaatgacatatagaaa |
46949552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 18829962 - 18830054
Alignment:
| Q |
136 |
tccctatatttatgctttatcttccttatagcatatcacagttaatgttatatcatgcagttattacaccaaatgcattttccattgaaacac |
228 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
18829962 |
tccctatatttatgccttattttccttatagcatatcaaagttaatgttatatcatgccgttattgcatcaaatgcattttccattgaaacac |
18830054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 22022525 - 22022429
Alignment:
| Q |
7 |
tccaataatatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgctatatagaatcactaaataata |
103 |
Q |
| |
|
||||| || ||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22022525 |
tccaagaaaatgaaaggaaaataatcaaatgctaacctgtgaagatccaaggctaaataatataaaaagacttgctatataggatcactaaataata |
22022429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 18829573 - 18829653
Alignment:
| Q |
7 |
tccaataatatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgctatata |
87 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
18829573 |
tccaagaaaatgaaagaaaaataatcaaatgataacatgtgaacatccaaggctaaataatataaatagacttgctatata |
18829653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 18830053 - 18830116
Alignment:
| Q |
325 |
acatttcatacaacaaacaattattgaaacaaagataagaagctaaagtaatgacacatagaaa |
388 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
18830053 |
acatatcatacaacaaacaattattgaaacaaacataagaagttaaagtaatgacatatagaaa |
18830116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 22022410 - 22022369
Alignment:
| Q |
81 |
ctatatagaatcactaaataataaggaacaaaggctattact |
122 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| |||||| |
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|
| T |
22022410 |
ctatataaaatcactaaataattaggaacaaaggccattact |
22022369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 6507973 - 6508359
Alignment:
| Q |
7 |
tccaataatatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgctatatagaatcactaaataataagg |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6507973 |
tccaagaaaatgaaagaaaaataatcaaatgataacctgtgaacatccaaggctaaataatataaaaagacttgctatatagaatcactaaattataagg |
6508072 |
T |
|
| Q |
107 |
aacaaaggctattactaagttcttttttctccctatatttatgctttatcttccttatagcatatcacagttaatgttatatcatgcagttattacacca |
206 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
6508073 |
aacataggctattactaagttattttttctccctatatttatgtcttattttccttatagcatatcacaattaatgttatatcatgcggttattgcacca |
6508172 |
T |
|
| Q |
207 |
aatgcattttccattgaaacacccacctctgttgtgtatattaagaagctatatttactagtannnnnnnnagaagcatcttactgcttcacgagctgct |
306 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
6508173 |
aatgcatttcccattgaaacacccacctctgttgtgtatattaagaagctatatttacttct---tttttaagaagcatcttactgcttcacgagctgct |
6508269 |
T |
|
| Q |
307 |
ccatggcagcttcttgaaacatttcatacaacaaacaattattga-------aacaaagataagaagctaaagtaatgacacatagaaag |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||| | || |||||||||||||| ||||||||| |||||||| |
|
|
| T |
6508270 |
ccatggcagcttcttgaaacatttcatacaaaaaacgattattgacacagagatcagagataagaagctaacgtaatgacatatagaaag |
6508359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 92 - 389
Target Start/End: Complemental strand, 3910700 - 3910406
Alignment:
| Q |
92 |
cactaaataataaggaacaaaggctattactaagttcttttttctccctatatttatgctttatcttccttatagcatatcacagttaatgttatatcat |
191 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3910700 |
cactaaatagtaaggaacaaaggctattgctaagttcttttttcttcctatatttatgctttattttccttatagcatatcacagttaatgttatatcat |
3910601 |
T |
|
| Q |
192 |
gcagttattacaccaaatgcattttccattgaaacacccacctctgttgtgtatattaagaagctatatttactagtannnnnnnnagaagcatcttact |
291 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
3910600 |
gcagttattgcaccaaatgcatttctcattgaaacacccacctctgttgtgtatattatgaagctatatttactatt---ttttttagaagcatcttact |
3910504 |
T |
|
| Q |
292 |
gcttcacgagctgctccatggcagcttcttgaaacatttcatacaacaaacaattattgaaacaaagataagaagctaaagtaatgacacatagaaag |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
3910503 |
gcttcacgagctgctccatggcagcttcttgaaacatttcatacaacaaacaattattgaaacagagataagaagctaaagtaatgacatatagaaag |
3910406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 142 - 380
Target Start/End: Original strand, 3418677 - 3418918
Alignment:
| Q |
142 |
tatttatgctttatcttccttatagcatatcacagttaatgttatatcatgcagttattacaccaaatgcattttccattgaaacacccacctctgttgt |
241 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||| | || || ||| |
|
|
| T |
3418677 |
tatttatgccttattttccttatagcatatcaaaattaatgttatatcatgccgttattgcaccaaatgcattttccattgaaacacctatctgtgctgt |
3418776 |
T |
|
| Q |
242 |
gtatattaagaagctatatttactagtannnnnnnnagaagcatcttactgcttcacgagctg------ctccatggcagcttcttgaaacatttcatac |
335 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3418777 |
gtatattaagaagctatatttactttt---ttttttagaagcagcttactgcttcacgagctgctccatctccatggcagcttcttgaaacatttcatac |
3418873 |
T |
|
| Q |
336 |
aacaaacaattattgaaacaaagataagaagctaaagtaatgaca |
380 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
3418874 |
aacaaacaattactgaaacagagataagaagctaaagtaatgaca |
3418918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 3417179 - 3417255
Alignment:
| Q |
7 |
tccaataatatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgcta |
83 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
3417179 |
tccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta |
3417255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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