View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_38 (Length: 437)
Name: NF0547_low_38
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 173 - 409
Target Start/End: Original strand, 32511527 - 32511764
Alignment:
| Q |
173 |
attatacaattcaaatgaatatatgaaaaa-atgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa |
271 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32511527 |
attatacaattcaaatgaatatatgaaaaagatgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa |
32511626 |
T |
|
| Q |
272 |
tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatggaaacagtttctc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |||||||||||| |
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| T |
32511627 |
tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgatccaatttcttgtcctcatcagcattatgaaaacagtttctc |
32511726 |
T |
|
| Q |
372 |
tgcttagcatctacaacaacttttctccacacagagtt |
409 |
Q |
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||||||||||| | |||||||||||||||||||||||| |
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| T |
32511727 |
tgcttagcatccataacaacttttctccacacagagtt |
32511764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 172 - 406
Target Start/End: Complemental strand, 32545860 - 32545628
Alignment:
| Q |
172 |
cattatacaattcaaatgaatatatgaaaaaatgtgatggcttcacttacctagagaagttggtagtttctgacttgtcccttatgcttagtttattaaa |
271 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||| |||||| |||||||||||| | | ||||||||| ||||||||||||||||||||||||| |
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| T |
32545860 |
cattatacaattaacatgaatatatgaaaagatgtgacggcttc--ttacctagagaaagtagatgtttctgacatgtcccttatgcttagtttattaaa |
32545763 |
T |
|
| Q |
272 |
tgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatggaaacagtttctc |
371 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||| | ||| |
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| T |
32545762 |
tgctgatgcagattcatctagtagttcaaattcaaagcatgcatcctcaataacttgatccaatttcttgtcctcatcagtattatggaaacaatctctt |
32545663 |
T |
|
| Q |
372 |
tgcttagcatctacaacaacttttctccacacaga |
406 |
Q |
| |
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| ||| ||||| |||||||| |||||||||||||| |
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| T |
32545662 |
tccttggcatcaacaacaacctttctccacacaga |
32545628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32511348 - 32511433
Alignment:
| Q |
1 |
acaagtataagtttctcccaaaagttatgccacaaattatgcaaatactaaagtctcagtttcacttcaaattatgaaaatatcac |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32511348 |
acaagtataagtttctcccaaaagttatgccacaaattatgcaaatactaaagtctcagtttcacttcaaattatgaaaatatcac |
32511433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 32644183 - 32644280
Alignment:
| Q |
261 |
agtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatg |
358 |
Q |
| |
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||||| ||||||| ||| |||||||| || || ||||||| |||||| | |||| ||||||||| || ||||||||||||||| ||||||||||| |
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| T |
32644183 |
agtttcttaaatggtgactcagattcttcaagaagttcaatctcaaacaagacatcatcaataactcgagccagtttcttgtcctcatcagcattatg |
32644280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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