View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_40 (Length: 431)
Name: NF0547_low_40
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 423
Target Start/End: Original strand, 19785277 - 19785668
Alignment:
| Q |
29 |
aaaggaaatctggatccaaaaataagcgtttgcaaccatcaaaccctttttctctaagaagaagaataaataaaaaacaacgccacaaccacagggagca |
128 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19785277 |
aaaggaaatctggatccaa---taagcgcttgcaaccatcaaacccttttgctctaagaacaagaataaataaaaaacaacgccacaaccacagggagca |
19785373 |
T |
|
| Q |
129 |
caaaggtgcatggaaactcactgacaaagactctttgatgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaa |
228 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785374 |
caaaggtgcgtggaaactcactgacaaagactctttgatgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaa |
19785473 |
T |
|
| Q |
229 |
gagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgatt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785474 |
gagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgatt |
19785573 |
T |
|
| Q |
329 |
gtttgaagaaggatcttcagtttttgaaatctgggttgcccacaaaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctatgat |
423 |
Q |
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| T |
19785574 |
gtttgaagaaggatcttcagtttttgaaatctgggttgcccaataaaatcagccttgctgctaaatggtgcccttctgttgactcttcctttgat |
19785668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 167 - 423
Target Start/End: Complemental strand, 19796175 - 19795919
Alignment:
| Q |
167 |
tgactgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcg |
266 |
Q |
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| T |
19796175 |
tgactgaagaggtggcagcgagagctaaggttgagaaagaaggtgctcacgttttgaaggaagagaagaggattgcattagctaagaagcttgttgatcg |
19796076 |
T |
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| Q |
267 |
ttacactaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttg |
366 |
Q |
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||| |||||||| || |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | |
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| T |
19796075 |
ttatactaccgatcccaattttaagtttcttcacgattgtatctctgatcatttcgctgattgtttgaagaaggatctcgagtttttgaaatccgggtcg |
19795976 |
T |
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| Q |
367 |
cccacaaaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctatgat |
423 |
Q |
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|||| |||||||| |||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
19795975 |
cccaataaaatcagtcttgctgctaaatggtgcccttctgttgactcttcctttgat |
19795919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 171 - 423
Target Start/End: Complemental strand, 15835478 - 15835226
Alignment:
| Q |
171 |
tgaagaggtggcggcgagggctaaggctcagaaacaaaccgctcatgttttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgttac |
270 |
Q |
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|||||||||||| ||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15835478 |
tgaagaggtggctgcgagagctaaggctcagaaagaaactgctcacgctttgaaggaagagaagaggattgccttggctaagaagcttgttgatcgatac |
15835379 |
T |
|
| Q |
271 |
actaccgaccctcattttaagtttcttcatgattctatctctgatcattttgctgattgtttgaagaaggatcttcagtttttgaaatctgggttgccca |
370 |
Q |
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| | |||||| |||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
15835378 |
aatcgtgaccctgattttaagttccttcataattgtatctctcatcattttgctgattgtttgaagaaggatcttgagtttttgaaatctgggtcaccca |
15835279 |
T |
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| Q |
371 |
caaaaatcagccttgttgctaaatggtgcccttctgttgagtcttcctatgat |
423 |
Q |
| |
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||||||||| |||| ||||||||||||||| ||| || | ||||||| |||| |
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| T |
15835278 |
gaaaaatcagtcttgctgctaaatggtgcccctctctttactcttcctttgat |
15835226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 222 - 416
Target Start/End: Complemental strand, 47713019 - 47712825
Alignment:
| Q |
222 |
gaaggaagagaagaggattgccttggctaagaagcttgttgatcgttacactaccgaccctcattttaagtttcttcatgattctatctctgatcatttt |
321 |
Q |
| |
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|||| ||||||||| ||||| |||||||||||||||||||| || || | | |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
47713019 |
gaagaaagagaagaagattgtattggctaagaagcttgttgaacggtataatcgtgaccctcattttaagtttcttcatgattgtatatctgatcatttt |
47712920 |
T |
|
| Q |
322 |
gctgattgtttgaagaaggatcttcagtttttgaaatctgggttgcccacaaaaatcagccttgttgctaaatggtgcccttctgttgagtcttc |
416 |
Q |
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||||||||||| ||||| ||| || |||||||||||| ||||| | ||||||| || || |||| ||| |||||||| ||||| ||||| ||||| |
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| T |
47712919 |
gctgattgtttaaagaaagatattgagtttttgaaatgtgggtcgtccacaaatattagtcttgctgcgaaatggtgtccttcggttgactcttc |
47712825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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