View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_41 (Length: 429)
Name: NF0547_low_41
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_41 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 38155690 - 38156078
Alignment:
| Q |
30 |
ccttattatcaacagttgaacaaactaatttagattgaacaaatagattatannnnnnnnnnnngataagcaatgaacaaatagattattcagggtagga |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38155690 |
ccttattatcaacagttgaacaaactaatttagattgaacaaatagattatatttttcttttttgataagcaatgaacaaatagattattcagggtagga |
38155789 |
T |
|
| Q |
130 |
taaagattttagcatatagggttgtgaatgaaacagttccatagattttagcatatatcaactccttggtgaagatctcgatgctttgattccggtttat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38155790 |
taaagattttagcatatagggttgtgaatgaaacagttccatagattttagcatatatcaactccttggtgaagatctcgatgctttgattccggtttat |
38155889 |
T |
|
| Q |
230 |
aacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgcttttcacgaaagcctgcaaggttgagggtcttcctcttccttgtcccta |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
38155890 |
aacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgcttttcacgaaagcctgcaaagttgagggtcttcctcttccctctcccta |
38155989 |
T |
|
| Q |
330 |
ttaacaacaacaagacatcttttaattctttggcttccactatcaatctcaaacagttgtccatcgactcgctcaatatttccgttcat |
418 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
38155990 |
ttagcaacaacaaggcatcttttaattctttggcttccactatcaatctcaaacagttgtccgtcgactcgctcaatatttccattcat |
38156078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 185 - 406
Target Start/End: Original strand, 38443359 - 38443580
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| ||||| |
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|
| T |
38443359 |
tatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcactttt |
38443458 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttccactatcaatctcaaaca |
384 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||| ||||||| |||||||| |
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| T |
38443459 |
cacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttctgctatcaagctcaaaca |
38443558 |
T |
|
| Q |
385 |
gttgtccatcgactcgctcaat |
406 |
Q |
| |
|
|| ||| || ||||||||||| |
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|
| T |
38443559 |
attttccgtcaactcgctcaat |
38443580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 38215530 - 38215712
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
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|
| T |
38215530 |
tatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38215629 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
38215630 |
cacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38215712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 367
Target Start/End: Complemental strand, 38182826 - 38182644
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
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|
| T |
38182826 |
tatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38182727 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38182726 |
cacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38182644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 38188305 - 38188487
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
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|
| T |
38188305 |
tatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38188404 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38188405 |
cacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38188487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 367
Target Start/End: Complemental strand, 38210052 - 38209870
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
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|
| T |
38210052 |
tatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38209953 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
38209952 |
cacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38209870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 38169774 - 38169956
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||| ||||||| | | ||||||| ||| ||||| |
|
|
| T |
38169774 |
tatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatcatattatgttcgagtatgatcgtatgtgtcactttt |
38169873 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38169874 |
cacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38169956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 367
Target Start/End: Original strand, 38185563 - 38185745
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
|
|
| T |
38185563 |
tatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38185662 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38185663 |
cacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38185745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 185 - 367
Target Start/End: Complemental strand, 38212794 - 38212612
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||| ||||||||||||||| | | ||||||| ||| |||||| |
|
|
| T |
38212794 |
tatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcgctttt |
38212695 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattctttggcttcc |
367 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38212694 |
cacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatcttttgattctttggcttcc |
38212612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 185 - 360
Target Start/End: Complemental strand, 38453136 - 38452961
Alignment:
| Q |
185 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgtgaacaatcgtatatgttgctttt |
284 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| | | | ||| ||| ||| ||||| |
|
|
| T |
38453136 |
tatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatcatatgatgttagagtatgatcatatgtgtcactttt |
38453037 |
T |
|
| Q |
285 |
cacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagacatcttttaattcttt |
360 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |||||||| ||||||| |
|
|
| T |
38453036 |
cacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatcttttgattcttt |
38452961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 246 - 368
Target Start/End: Original strand, 38219953 - 38220075
Alignment:
| Q |
246 |
atcatatgatgttcgtgaacaatcgtatatgttgcttttcacgaaagcctgcaaggttgagggtcttcctcttccttgtccctattaacaacaacaagac |
345 |
Q |
| |
|
||||||||||||||| | | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
38219953 |
atcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggc |
38220052 |
T |
|
| Q |
346 |
atcttttaattctttggcttcca |
368 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
38220053 |
atcttttgattctttggcttcca |
38220075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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