View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_45 (Length: 414)
Name: NF0547_low_45
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 205 - 373
Target Start/End: Complemental strand, 27968663 - 27968495
Alignment:
| Q |
205 |
agacttacataagcttttccaataaagatacacatattcttacttactacagaaactgataacataaaaatatgttctaattcagatcctttgaattaaa |
304 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| | |
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| T |
27968663 |
agacttacataagcttttcaaataaagatacaaatattcttacttactacataaactgataacataaaaatatttcctaattcagatcctttgaattaga |
27968564 |
T |
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| Q |
305 |
aattaatcatacaaattttatgctaaaaatatgaaaagtatatatggcactgggaacacatttgaagaa |
373 |
Q |
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| T |
27968563 |
aagtaatcatacaaattttatgctaaaaatatgaaaagtatatatggaactgggaacacatttgaagaa |
27968495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 27968936 - 27968757
Alignment:
| Q |
9 |
caacaatatcacctcttcatcacatatttctgcatgagnnnnnnnncaagtggtgtgtatactagaaattttgaatctacattttttattcctctcacta |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27968936 |
caacaacatcacctcttcatcacatatttctgcatgagttttttt-caagtggtgtgtatactagaaattttgaatctacattttttattcctctcacta |
27968838 |
T |
|
| Q |
109 |
catacctataaattaaaaaggcttcataataagaatctcacctcatccttgtttgatttccaaaactgatcttcttagttcttacttgtg |
198 |
Q |
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| T |
27968837 |
catacctataaat---------gtcataataagaatctcacctcatacttgtttgatttccaaaactgatcttcttagttcttacttgtg |
27968757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Original strand, 15362704 - 15362734
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacattt |
367 |
Q |
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|
| T |
15362704 |
gaaaagtatatatggcactgggaacacattt |
15362734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 371
Target Start/End: Complemental strand, 28248176 - 28248142
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacatttgaag |
371 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28248176 |
gaaaagtatatatggcactgggaacacatttgaag |
28248142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 33204153 - 33204196
Alignment:
| Q |
284 |
attcagatcctttgaattaaaaattaatcatacaaattttatgc |
327 |
Q |
| |
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| T |
33204153 |
attcagaccctttgaattataaagtaatcatacaaattttatgc |
33204196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Original strand, 1655545 - 1655575
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacattt |
367 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
1655545 |
gaaaagtatatatggcactgggaacacattt |
1655575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Complemental strand, 7395294 - 7395264
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacattt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
7395294 |
gaaaagtatatatggcactgggaacacattt |
7395264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Complemental strand, 7406865 - 7406835
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacattt |
367 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
7406865 |
gaaaagtatatatggcactgggaacacattt |
7406835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Complemental strand, 31341843 - 31341813
Alignment:
| Q |
337 |
gaaaagtatatatggcactgggaacacattt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
31341843 |
gaaaagtatatatggcactgggaacacattt |
31341813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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