View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_48 (Length: 409)
Name: NF0547_low_48
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 46276605 - 46276234
Alignment:
| Q |
9 |
aacaaaggaaattaaaacatcaacttttgacattagtctcaatcacaattaacatgtcacaatcacctgctataccaatgggnnnnnnngtggaactgca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46276605 |
aacaaaggaaattaaaacatcaacttttgacattagtctcaatcacaattaacatgtcacaatcacctgctataccaatgggaaaaaaagtggaactgca |
46276506 |
T |
|
| Q |
109 |
tgcatttcgattgttatgcactgcggcaccgccccaaacgtgaatgttggttctcacaatttcatgctgtataacttcccgctacactgttgatataagt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46276505 |
tgcatttcgattgttatgcactgcggcaccgccccaaacgtgaatgttggttctcactatttcatgctgtataacttcccgctacactgttgatataagt |
46276406 |
T |
|
| Q |
209 |
gagaaaataaaagtcattaaaacttgaaagaggttttcttcttgcatggttttatctggtttgacttttattttgaagagttgagaaattgtatttagaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46276405 |
gagaaaataaaagtcattaaaacttgaaagaggttttcttcttgcatggttttatctggtttgacttttattttgaagagttgagaaattgtatttagaa |
46276306 |
T |
|
| Q |
309 |
ttcaatgtatgtttggattaatagtgaaatttgtaaaatttcggcagcatttatataattttgtgaacctcc |
380 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46276305 |
ttcaatgtatgtttggattaattgtgaaatttgtaaaatttcggcagcatttatataattttttgaacctcc |
46276234 |
T |
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