View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_5 (Length: 682)

Name: NF0547_low_5
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_5
NF0547_low_5
[»] chr6 (1 HSPs)
chr6 (14-653)||(6011631-6012270)


Alignment Details
Target: chr6 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 14 - 653
Target Start/End: Complemental strand, 6012270 - 6011631
Alignment:
Q  14 agagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaaatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012270 agagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaaatt 6012171  T
Q  114 accttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaaccca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012170 accttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaaccca 6012071  T
Q  214 tgtctagtaggcgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacgcct 313  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012070 tgtctagtagacgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacgcct 6011971  T
Q  314 atcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaataagc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011970 atcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaataagc 6011871  T
Q  414 caatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgtaga 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011870 caatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgtaga 6011771  T
Q  514 tttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaaggaaaactcagagacaccatgacaggagtttacttaaatagtcataaccat 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011770 tttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaatgaaaactcagagacaccatgacaggagtttacttaaatagtcataaccat 6011671  T
Q  614 tgtaattcaaaaattgaacgtgctaaaaaatggacggttc 653  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  6011670 tgtaattcaaaaattgaacgtgctaaaatatggacagttc 6011631  T

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