View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_50 (Length: 400)
Name: NF0547_low_50
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 34572432 - 34572044
Alignment:
| Q |
1 |
cccttgtagttttgaagaaggcattgcactaatgctgtcaagagataaccaaccagaaagtcctgaaaatttacagggtggtattttagtagataagatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34572432 |
cccttgtagttttgaagaaggcattgcactaatgcagtcaagagataaccaaccagaaagtcctgaaaatttgcagggtggtattttagtagataagatt |
34572333 |
T |
|
| Q |
101 |
tatgaagtatctccatacaatcttaatgtagttcttttcgcgccggattcacagtttaggaaagatttagcagaacatcaagggacaacaaatttgcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34572332 |
tatgaagtatctccatacaatcttaatgtagttcttttcgtgccggattcacagtttaggaaagatttagcagaacaacaagggacaacaaatttgcaag |
34572233 |
T |
|
| Q |
201 |
aaggggcttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaataccac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572232 |
aaggggcttggtcctggaaagatgaagatatgtcttgtttgactcgagtcgtcaactatacaaaagctgcttcaaaattggttaaagctctcaataccac |
34572133 |
T |
|
| Q |
301 |
cgaggaacaaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572132 |
tgaggaacaaacctatattagagcgactaaagatgaatttgatgtacttgttagtgtatgcacccctgaggttccttatgggaattcat |
34572044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 549 times since January 2019
Visitors: 3653