View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_51 (Length: 400)
Name: NF0547_low_51
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 167 - 392
Target Start/End: Complemental strand, 32157822 - 32157597
Alignment:
| Q |
167 |
taggtatgacagtgttacaattgatggtaaactgaaatggcaagatcaactaaacgaatctaataagccattctttgatatatgtgatggaatatttgta |
266 |
Q |
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| T |
32157822 |
taggtatgacagtgttacaattgatggtaaactgaattggcaagatcaactaaacgaatctaataagccattctttgatatatgtgatggaatatttgta |
32157723 |
T |
|
| Q |
267 |
aactatacatggaaggtattgcttaccttccttcaacaacgccgatgtttaatcagctgtcgttttccttagttaatttaattttattatgcaatcatat |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32157722 |
aactatacatggaaggtattgcttaccttccttcaacaacgccgatgtttaatcagctgtcgttttccttagttaatttaattttattatgtaatcatat |
32157623 |
T |
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| Q |
367 |
aggaagactatccaaggatctctgct |
392 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32157622 |
aggaagactatccaaggatctctgct |
32157597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 34572432 - 34572266
Alignment:
| Q |
1 |
cccttgtagttttgaagaaggcattgcactaatgctgtcaagagataaccaaccagaaagtcctgaaaatttacagggtggtattttagtagataagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34572432 |
cccttgtagttttgaagaaggcattgcactaatgcagtcaagagataaccaaccagaaagtcctgaaaatttgcagggtggtattttagtagataagatt |
34572333 |
T |
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| Q |
101 |
tatgaagtatctccatacaatcttaatgtagttcttttcgcgccggattcacagtttaggaaagatt |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34572332 |
tatgaagtatctccatacaatcttaatgtagttcttttcgtgccggattcacagtttaggaaagatt |
34572266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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