View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_52 (Length: 397)
Name: NF0547_low_52
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_52 |
 | |
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| [»] chr8 (6 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 46 - 397
Target Start/End: Complemental strand, 8974883 - 8974532
Alignment:
| Q |
46 |
agatcttgtaatgatagtgatgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggtta |
145 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974883 |
agatcttgtaatgatagtgatgtttttttgtgtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggtta |
8974784 |
T |
|
| Q |
146 |
agtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaa |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8974783 |
agtgctttgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaa |
8974684 |
T |
|
| Q |
246 |
atatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggaga |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974683 |
atatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggaga |
8974584 |
T |
|
| Q |
346 |
tgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8974583 |
tgacatagatgttccacttaaaaaattgaacttgttgaagactttacgtgac |
8974532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 75 - 391
Target Start/End: Complemental strand, 8963458 - 8963142
Alignment:
| Q |
75 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagc |
174 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| | || ||||||||||||||||| |
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|
| T |
8963458 |
gtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagc |
8963359 |
T |
|
| Q |
175 |
tccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgac |
274 |
Q |
| |
|
||| |||||||||||||||| | |||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
8963358 |
tcccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgac |
8963259 |
T |
|
| Q |
275 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
374 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
8963258 |
ctaatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatgaggacatgacatagatgttccagttaaaaaattga |
8963159 |
T |
|
| Q |
375 |
acttgttgaagacttta |
391 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
8963158 |
acttgttgacgacttta |
8963142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 389
Target Start/End: Original strand, 8945626 - 8945940
Alignment:
| Q |
75 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagc |
174 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| | | || |||||| |
|
|
| T |
8945626 |
gtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacataaccagc |
8945725 |
T |
|
| Q |
175 |
tccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgac |
274 |
Q |
| |
|
||| ||||| ||| ||||| || | || |||||| |||||||||| ||| ||||||||||||||||| |||||| |||||||||||| ||||| ||| |
|
|
| T |
8945726 |
tcccaatgcaagaggagttgcaacttcattacctttttcaatgtctttgatatgttccttagtattatcatatatgtttgatgttgtcataattgccgac |
8945825 |
T |
|
| Q |
275 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
374 |
Q |
| |
|
|| |||||||||||||||||||||||| | || |||| ||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
8945826 |
cttatagctgcagggctccaatcaacacgcgctccttttaaaagtgctcctacaccggcaacatgaggacatgacgtagatgttccagttaaaaatttga |
8945925 |
T |
|
| Q |
375 |
acttgttgaagactt |
389 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8945926 |
acttgttgaagactt |
8945940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 86 - 386
Target Start/End: Complemental strand, 8958433 - 8958133
Alignment:
| Q |
86 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || || || | |||||||||||| ||||| |
|
|
| T |
8958433 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaa |
8958334 |
T |
|
| Q |
186 |
aaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgc |
285 |
Q |
| |
|
|||| |||||| | || || | |||||||||||||| ||| |||||||||||||||||| |||||| || |||||||| ||||| |||| ||| || || |
|
|
| T |
8958333 |
aaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtattatcaattatgtccgacgttgtcataattgccgaccgaatcgcggc |
8958234 |
T |
|
| Q |
286 |
agggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaag |
385 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||| | ||||| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
8958233 |
agggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttgaag |
8958134 |
T |
|
| Q |
386 |
a |
386 |
Q |
| |
|
| |
|
|
| T |
8958133 |
a |
8958133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 75 - 342
Target Start/End: Original strand, 9948097 - 9948363
Alignment:
| Q |
75 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagc |
174 |
Q |
| |
|
|||||||||| ||| || | ||||||||||||||||||||| ||||||| ||||||| ||| || |||| ||| ||||| | | | | || || ||| |
|
|
| T |
9948097 |
gtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacataactagc |
9948196 |
T |
|
| Q |
175 |
tccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgac |
274 |
Q |
| |
|
|||| ||||| ||| ||||| || ||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
9948197 |
tcctaatgcaagaggagttgcaactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatggttgatgttgtcataattgctgac |
9948296 |
T |
|
| Q |
275 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgagg |
342 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9948297 |
cttatagctgcaggg-tccaatcagcatgtgctcctttcaaaagtgctccaacaccagcaacatgagg |
9948363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 9949362 - 9949422
Alignment:
| Q |
75 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaag |
135 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
9949362 |
gtgtgaagttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaag |
9949422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 75 - 389
Target Start/End: Original strand, 21686789 - 21687103
Alignment:
| Q |
75 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagc |
174 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| | ||||||||| || ||||| ||||||||||| |
|
|
| T |
21686789 |
gtgtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagc |
21686888 |
T |
|
| Q |
175 |
tccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgac |
274 |
Q |
| |
|
||| ||||||||| |||||| | |||| || |||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| ||||| ||| |
|
|
| T |
21686889 |
tcccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattgccgac |
21686988 |
T |
|
| Q |
275 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
374 |
Q |
| |
|
||||||| || ||||||||| || ||||| |||| ||||| ||| ||||||| |||||||| ||| ||||||||||||||||| || ||||||| |
|
|
| T |
21686989 |
ctaatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacatgtggacatgacatagatgttccatctatcaaattga |
21687088 |
T |
|
| Q |
375 |
acttgttgaagactt |
389 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
21687089 |
agttgttaaagactt |
21687103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 86 - 384
Target Start/End: Original strand, 34962420 - 34962715
Alignment:
| Q |
86 |
agtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtgcaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || || || | |||||||||||| ||||| |
|
|
| T |
34962420 |
agtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaa |
34962519 |
T |
|
| Q |
186 |
aaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgc |
285 |
Q |
| |
|
||||||||||| | |||| || ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| ||||| |
|
|
| T |
34962520 |
aaggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgc |
34962616 |
T |
|
| Q |
286 |
agggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaa |
384 |
Q |
| |
|
|||||||||||| ||| | |||||||||| || | ||||| ||||||||||| | | ||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
34962617 |
tgggctccaatcactatgcactcctttcaaaagcgccgcgacacctgcaacatgagggcacgccatagatgttccacttatcaaattgaatttgctgaa |
34962715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 200 - 391
Target Start/End: Original strand, 19375625 - 19375816
Alignment:
| Q |
200 |
ttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaa |
299 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||| || | |||||||||||||||||| || || || | ||| |||| || |||||||||| |
|
|
| T |
19375625 |
ttgttaccttttccaatgtctttcataagttttgtagtattgtctattatgtctgatgttgtcataatcgcagaacgaattgctgtcggactccaatcaa |
19375724 |
T |
|
| Q |
300 |
catgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaagacttta |
391 |
Q |
| |
|
||||||| ||||||||||| | ||| ||| ||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19375725 |
catgtgctcctttcaaaagtaatgctatacctgcaacgtgaggacatgccatagatgttccacttatcaaattgaacttgttgaagacttta |
19375816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 386
Target Start/End: Complemental strand, 49008601 - 49008292
Alignment:
| Q |
77 |
gtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctc |
176 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||||| ||||| |||||||| || |||| |
|
|
| T |
49008601 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
49008502 |
T |
|
| Q |
177 |
cttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacct |
276 |
Q |
| |
|
| || ||||||| ||| ||| || || ||||||||| | || ||||| || || || || || |||||||||||||||||||| || || || |
|
|
| T |
49008501 |
ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct |
49008402 |
T |
|
| Q |
277 |
aatagctgcagggctccaatcaacatgtgca--gctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
374 |
Q |
| |
|
||| ||||| ||||||||| ||| ||||| |||| ||||||||| ||||||| ||||| || ||| ||||||| |||||||||||||| || |||| |
|
|
| T |
49008401 |
aatggctgctgggctccaa-caa-gggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttga |
49008304 |
T |
|
| Q |
375 |
acttgttgaaga |
386 |
Q |
| |
|
| |||||||||| |
|
|
| T |
49008303 |
agttgttgaaga |
49008292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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