View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_53 (Length: 392)
Name: NF0547_low_53
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_53 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 345
Target Start/End: Original strand, 7766504 - 7766844
Alignment:
| Q |
5 |
tgtccaataatatacataacgaaacaacaaagcaaacaaaagaaaaacgagaaatctaagctgcaacattcaatccgaataatataagctaaatgcttaa |
104 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766504 |
tgtccaacaaaatacagaacgaaacaacaaagcaaacaaaagaaaaacgagaaatctaagctgcaacattcaatccgaataatataagctaaatgcttaa |
7766603 |
T |
|
| Q |
105 |
taaacctatgccattgctttaagagtaggatttaggaacaacttgcattatggaccaaaagtgaggaactaaagctcaatttggaagaagccaaatcaaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7766604 |
taaacctatgccattgctttaagagtaggatttaggaacaacttgcactatggaccaaaagtgaggaactgaagctcaatttggaagaagccaaatcaaa |
7766703 |
T |
|
| Q |
205 |
caccaaaagattgtcttccaattgatgtccaccaataacaattgaagttttggtaaatgacattcttggctctgtccctccatcaacaaatccaagacat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766704 |
caccaaaagattgtcttccaattgatgtccaccaataacaattgaagttttggtaaatgacattcttggctctgtccctccatcaacaaatccaagacat |
7766803 |
T |
|
| Q |
305 |
gctacatttttctttatattaaccatcaaattggcttcatg |
345 |
Q |
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| T |
7766804 |
gctacatttttctttacattaaccatcaaattggcttcatg |
7766844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 97 - 345
Target Start/End: Original strand, 7773923 - 7774171
Alignment:
| Q |
97 |
atgcttaataaacctatgccattgctttaagagtaggatttaggaacaacttgcattatggaccaaaagtgaggaactaaagctcaatttggaagaagcc |
196 |
Q |
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| T |
7773923 |
atgctttataaacctatgccattaattcaagagtagaatttaggaacaacttgcattgtgaaccaaaagtgaggaactaaagctcaatttggaagaagct |
7774022 |
T |
|
| Q |
197 |
aaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaattgaagttttggtaaatgacattcttggctctgtccctccatcaacaaatc |
296 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
7774023 |
aaatcaaacaccaaaagattgtcctccaattgatgtccaccaataacaattgaagcttttgtaaatgacattcttggctctgtccctccatcaacaattc |
7774122 |
T |
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| Q |
297 |
caagacatgctacatttttctttatattaaccatcaaattggcttcatg |
345 |
Q |
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| T |
7774123 |
caagacatgctacatttttcttcacattaaccatcaaatttgcttcatg |
7774171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 7704445 - 7704378
Alignment:
| Q |
182 |
aatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaattga |
249 |
Q |
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| T |
7704445 |
aatttggaagaaactaaatcaaactccaatagattctcctccaattggtgcccaccaataacaattga |
7704378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 7745825 - 7745888
Alignment:
| Q |
182 |
aatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaa |
245 |
Q |
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| T |
7745825 |
aatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
7745888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 7734007 - 7733959
Alignment:
| Q |
267 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
315 |
Q |
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| T |
7734007 |
ttcttggctctttaccaccatccacaaatccaagacatgctacattttt |
7733959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 7711767 - 7711704
Alignment:
| Q |
182 |
aatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaa |
245 |
Q |
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||||| |||||| |||||||||| |||| |||||||| |||||||| ||||||||||| |||| |
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| T |
7711767 |
aatttagaagaaatcaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
7711704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 7749824 - 7749869
Alignment:
| Q |
208 |
caaaagattgtcttccaattgatgtccaccaataacaattgaagtt |
253 |
Q |
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| T |
7749824 |
caaaagattgtcttctaactgatgcccaccaataacaatggaagtt |
7749869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 7704375 - 7704327
Alignment:
| Q |
267 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
315 |
Q |
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||||||| ||| | || ||||| |||||||||||||||||||||||||| |
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| T |
7704375 |
ttcttggttctttaccaccatccacaaatccaagacatgctacattttt |
7704327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 7711697 - 7711649
Alignment:
| Q |
267 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
315 |
Q |
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||||||||||| | || ||||| ||||||||||||||||| |||||||| |
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| T |
7711697 |
ttcttggctctttaccaccatccacaaatccaagacatgcaacattttt |
7711649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 7726585 - 7726537
Alignment:
| Q |
267 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
315 |
Q |
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||||||||||| | || ||||| ||||||||||||||||| |||||||| |
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| T |
7726585 |
ttcttggctctttaccaccatccacaaatccaagacatgcaacattttt |
7726537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 7745895 - 7745943
Alignment:
| Q |
267 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
315 |
Q |
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|||||||||| | || ||||| |||||||||||||||||||||||||| |
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| T |
7745895 |
ttcttggctcattaccaccatccacaaatccaagacatgctacattttt |
7745943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 66 - 346
Target Start/End: Complemental strand, 12176 - 11909
Alignment:
| Q |
66 |
tgcaacattcaatccgaataatataagctaaa-tgcttaataaacctatgccattgctttaagagtaggatttaggaacaacttgcattatggaccaaaa |
164 |
Q |
| |
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||||||||||||| | |||||||| ||||| |||||||| ||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||| |
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| T |
12176 |
tgcaacattcaatgtggctaatataatctaaaatgcttaatgaacatatgccattaattcaagagtaggatttaggaacaacttgcattgtggaccaaaa |
12077 |
T |
|
| Q |
165 |
gtgaggaactaaagctcaatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaattgaagttttggtaaatga |
264 |
Q |
| |
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|||||||||||||||||||||| || ||||| | ||||||||||||||||| |||||||||||||||| ||||| ||| | | | || |
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|
| T |
12076 |
gtgaggaactaaagctcaatttagaggaagctagatcaaacaccaaaagat--------------tgtccaccaataacaactgaagcttttgcagacga |
11991 |
T |
|
| Q |
265 |
cattcttggctctgtccctccatcaacaaatccaagacatgctacatttttctttatattaaccatcaaattggcttcatgt |
346 |
Q |
| |
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| |||||| |||||||||||| |||||| | | |||||||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
11990 |
ccatcttggtgatgtccctccatcgacaaatgccaaacatgctacatttttctttacattaaccattaaattggtttcatgt |
11909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 48521583 - 48521697
Alignment:
| Q |
139 |
ggaacaacttgcattatggaccaaaagtgaggaactaaagctcaatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccacca |
238 |
Q |
| |
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|||||||||||| || | || ||||||||||| ||||||| | ||| || ||| | | ||||||| ||| |||||| || ||||||||||| |||||| |
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| T |
48521583 |
ggaacaacttgctttgttgagtaaaagtgaggagctaaagccaagttttgaggaaacaagatcaaactccacaagattatcctccaattgatgcccacca |
48521682 |
T |
|
| Q |
239 |
ataacaattgaagtt |
253 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
48521683 |
ataataattgaagtt |
48521697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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