View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_54 (Length: 387)
Name: NF0547_low_54
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 2711147 - 2711509
Alignment:
| Q |
1 |
cccacttatattaaaaataaagtctgactagagtt-ataaagatgatataaaaacataacacatacatagccg--actcctacttattcctcttctgtta |
97 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2711147 |
cccacttatattaaaaataaagtccgactagagtttataaagatgatataaaaacataacacatacatagcctctactcctacttattcctcttctgtta |
2711246 |
T |
|
| Q |
98 |
tt-ctaagacaaattcttttatacatgatcagttatctcacacatctacaacaatttaaacaattactttgctaacaaaaaagtcaaatccttctttatt |
196 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2711247 |
tttctaagacaaattcttttatacatgatcagttatctcacacatctacaacaatttaaacaattactttgctaacaaaaaagtcaaatccttctttatt |
2711346 |
T |
|
| Q |
197 |
ttattagtatttctttatatagtatataaacatttagcttagcatcatttgtatgcactcccttctccaccttctaattggaataaaaaatacaccaaaa |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2711347 |
ttattagtatttctttatatagtatataaacatttagcttagcatcatttgtatgcactcccttctccatcttctaattggaataaaaaatacaccaaaa |
2711446 |
T |
|
| Q |
297 |
ggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttcgagttgtgatt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2711447 |
ggcatatgtctgttatctgccttgcaagcttgtggtggagacactgtttttcgagttgtgatt |
2711509 |
T |
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