View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_55 (Length: 382)
Name: NF0547_low_55
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 46 - 378
Target Start/End: Original strand, 1155060 - 1155393
Alignment:
| Q |
46 |
tggagcttgtt-cagtccatgaagtgtattcttcaacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttat |
144 |
Q |
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| T |
1155060 |
tggagcttgtttcagtccatgaagtgtattcttcaacttatacaccttatgcccattgccgttaatttcatatccgcaaggctgttccacaaacacttat |
1155159 |
T |
|
| Q |
145 |
tcattgagtagaccatgcaaaaatgctgaatttacatccaattgatagatttacatcccctttgagtagtaaccgcaagcatttgtcgagttgtatctaa |
244 |
Q |
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| T |
1155160 |
tcattgagtagaccatgcaaaaatgctgaatttacatccaattgatagatttacatcccctttgagtagtaactgcaagcattagtcgagttgtatctaa |
1155259 |
T |
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| Q |
245 |
tcttgctgccggtgtgaagacttcatagtaattgacaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattc |
344 |
Q |
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| T |
1155260 |
tcttgctgccggtgtgaagacttcatagtaatcgaaaccatgttgttgagcatatcttttttccacaagtcttgctttgtatttatctatttctccattc |
1155359 |
T |
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| Q |
345 |
tcattgagctttgttttgaatattcatctcactc |
378 |
Q |
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| T |
1155360 |
tcattgagctttgttttgaatatccatttcactc |
1155393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 11850181 - 11850127
Alignment:
| Q |
307 |
ccacaagtcttgctttgtatttatctatttctccattctcattgagctttgtttt |
361 |
Q |
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| T |
11850181 |
ccactagtctcgccttgtacttatctatctctccattctcattgagcttagtttt |
11850127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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