View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_56 (Length: 380)

Name: NF0547_low_56
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_56
NF0547_low_56
[»] chr6 (13 HSPs)
chr6 (30-372)||(11002448-11002790)
chr6 (30-372)||(11018829-11019171)
chr6 (37-370)||(10968275-10968608)
chr6 (37-370)||(10982225-10982558)
chr6 (57-373)||(11079616-11079932)
chr6 (314-372)||(11050229-11050287)
chr6 (299-337)||(4256408-4256446)
chr6 (303-337)||(4490156-4490190)
chr6 (303-337)||(4493252-4493286)
chr6 (303-337)||(4557422-4557456)
chr6 (303-337)||(4592528-4592562)
chr6 (30-88)||(18300125-18300183)
chr6 (299-336)||(4516619-4516656)
[»] chr7 (1 HSPs)
chr7 (303-337)||(3086717-3086751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (301-337)||(3483-3519)
[»] chr2 (1 HSPs)
chr2 (302-346)||(24462263-24462307)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 11002448 - 11002790
Alignment:
Q  30 gtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002448 gtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctat 11002547  T
Q  130 tggattggagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002548 tggattggagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttg 11002647  T
Q  230 gagaggacgaaggaaaagggaatggtagtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcattgtggat 329  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11002648 gagaggacgaaggaaaagggaatggtggtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcactgtggat 11002747  T
Q  330 ggaactcagtattggaagctatttgtgaaggagtgcctatgat 372  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  11002748 ggaactcagtgttggaagctatttgtgaaggagtgcctatgat 11002790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 11018829 - 11019171
Alignment:
Q  30 gtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctat 129  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  11018829 gtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttctagggctcaattgaatgagatagctat 11018928  T
Q  130 tggattggagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttg 229  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||| ||  || |||  ||  |  | |||||||| || || || |||||||||||||||    
T  11018929 tggattggagaaaagtgagcaaagattcttgtgggttgttaggagtgaaccagactcagacaagttgagtttggacgagttatttccagaagggtttttg 11019028  T
Q  230 gagaggacgaaggaaaagggaatggtagtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcattgtggat 329  Q
    |||||||| ||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||  | || || |||||||| ||||||||||||||||    
T  11019029 gagaggacaaaggacaagggaatggttgtgagaaattgggccccacaagttgcgatattgagtcataactccgtgggtggatttgtgactcattgtggat 11019128  T
Q  330 ggaactcagtattggaagctatttgtgaaggagtgcctatgat 372  Q
    ||||||| || |||||||||||||||||||| ||||| |||||    
T  11019129 ggaactccgtgttggaagctatttgtgaaggggtgccaatgat 11019171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 37 - 370
Target Start/End: Original strand, 10968275 - 10968608
Alignment:
Q  37 ttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctattggattg 136  Q
    |||||| || |||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  10968275 ttggctcgagtcgcaatctagtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattg 10968374  T
Q  137 gagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttggagagga 236  Q
    || | |||||||||||||||||| ||| |||| ||||| ||||   |||| ||||| |  |||||||| || ||| | || |||||||||||||||||||    
T  10968375 gaaataagtgagcaaagattcttgtgggttgttaggagtgagttggacttagaggagcaaagtttggacgagttgcttcctgaagggtttttggagagga 10968474  T
Q  237 cgaaggaaaagggaatggtagtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcattgtggatggaactc 336  Q
    | ||| ||||||||||||| |  ||||||||||||||||||| ||||||||| |  || || ||  |||||||||||||||| |||||||||||||||||    
T  10968475 caaagcaaaagggaatggtggcaagaaattgggcaccacaaggtgcaatattaaagcatgactcgattggtggattcgtgacacattgtggatggaactc 10968574  T
Q  337 agtattggaagctatttgtgaaggagtgcctatg 370  Q
     || ||||||||||||||||||||||||||||||    
T  10968575 ggtgttggaagctatttgtgaaggagtgcctatg 10968608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 37 - 370
Target Start/End: Original strand, 10982225 - 10982558
Alignment:
Q  37 ttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctattggattg 136  Q
    ||||||||| |||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  10982225 ttggcttgagtcgcaacctattcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattg 10982324  T
Q  137 gagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttggagagga 236  Q
    || |||||||||||||||||||| ||| || | ||||||||||   | || ||||| |  |||||||| || ||| | || |||||||||||||||||||    
T  10982325 gaaaaaagtgagcaaagattcttgtgggttattaggagcgagttggatttagaggagcaaagtttggacgagttgctccctgaagggtttttggagagga 10982424  T
Q  237 cgaaggaaaagggaatggtagtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcattgtggatggaactc 336  Q
    | || |||| ||||||||| || ||||||||||||||||||| ||||||||| |  || || ||  | |||||||||||||| |||||||||||||||||    
T  10982425 caaaagaaaggggaatggtggtaagaaattgggcaccacaaggtgcaatattaaagcatgactcgatcggtggattcgtgacacattgtggatggaactc 10982524  T
Q  337 agtattggaagctatttgtgaaggagtgcctatg 370  Q
     || ||||||||| | ||||||||||||||||||    
T  10982525 ggtgttggaagctgtatgtgaaggagtgcctatg 10982558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 57 - 373
Target Start/End: Original strand, 11079616 - 11079932
Alignment:
Q  57 gtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagatagctattggattggagaaaagtgagcaaagatt 156  Q
    ||||||||||||| || ||||| ||||||||| | ||||||||||||||||||||  | ||| ||||||||||||| ||||| |||||||| ||||||||    
T  11079616 gtcaaagcgtcgttttgttgagctttggaagcttagggagattttctaaggctcaaattaatcagatagctattggtttggaaaaaagtgaacaaagatt 11079715  T
Q  157 cttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggtttttggagaggacgaaggaaaagggaatggta 256  Q
    ||| |||||||| ||||||||     | | ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||     
T  11079716 cttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaagggtttttggagaggacaaaggagaagggaatggtt 11079815  T
Q  257 gtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattcgtgactcattgtggatggaactcagtattggaagctatttgtg 356  Q
    || ||||| ||||||||||||| | ||||| | || ||    ||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |    
T  11079816 gttagaaactgggcaccacaaggttcaatactaagacatagctcagttggtgggttcgtgactcattgtggatggaactccgtgttggaagctatttgcg 11079915  T
Q  357 aaggagtgcctatgata 373  Q
    ||||||| || ||||||    
T  11079916 aaggagttccaatgata 11079932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 11050229 - 11050287
Alignment:
Q  314 gtgactcattgtggatggaactcagtattggaagctatttgtgaaggagtgcctatgat 372  Q
    |||| |||||||||||||||||| || ||||||||||||| |||||| ||||| |||||    
T  11050229 gtgattcattgtggatggaactccgtgttggaagctatttatgaaggggtgccaatgat 11050287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 4256408 - 4256446
Alignment:
Q  299 tcagttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4256408 tcagttggtggattcttgactcattgaggatggaactca 4256446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 4490156 - 4490190
Alignment:
Q  303 ttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  4490156 ttggtggattcttgactcattgtggatggaactca 4490190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 4493286 - 4493252
Alignment:
Q  303 ttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  4493286 ttggtggattcttgactcattgtggatggaactca 4493252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 4557456 - 4557422
Alignment:
Q  303 ttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  4557456 ttggtggattcttgactcattgtggatggaactca 4557422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 4592562 - 4592528
Alignment:
Q  303 ttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  4592562 ttggtggattcttgactcattgtggatggaactca 4592528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 18300183 - 18300125
Alignment:
Q  30 gtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagc 88  Q
    |||||| ||||||  ||| ||||||||||||||| || ||||||||||| |||||||||    
T  18300183 gtttgagttggctcaacttgcaacctagtcaaagtgttgtgtttttgagctttggaagc 18300125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 4516656 - 4516619
Alignment:
Q  299 tcagttggtggattcgtgactcattgtggatggaactc 336  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  4516656 tcagttggaggattcttgactcattgtggatggaactc 4516619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 3086751 - 3086717
Alignment:
Q  303 ttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||| |||||||||||||||||||||||    
T  3086751 ttggtggattcttgactcattgtggatggaactca 3086717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 3483 - 3519
Alignment:
Q  301 agttggtggattcgtgactcattgtggatggaactca 337  Q
    ||||||||||||| | |||||||||||||||||||||    
T  3483 agttggtggattcttaactcattgtggatggaactca 3519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 24462307 - 24462263
Alignment:
Q  302 gttggtggattcgtgactcattgtggatggaactcagtattggaa 346  Q
    ||||||| |||  ||||||||||||||||||||||||| ||||||    
T  24462307 gttggtgcatttttgactcattgtggatggaactcagtgttggaa 24462263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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