View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_57 (Length: 375)
Name: NF0547_low_57
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 11156959 - 11156656
Alignment:
| Q |
30 |
atcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtgaatagaaga |
129 |
Q |
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| T |
11156959 |
atcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaacaagtgaatagaaga |
11156860 |
T |
|
| Q |
130 |
ggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgaccnnnnnnngtaag |
229 |
Q |
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| T |
11156859 |
ggggaaagctttgtgtttttccgaatcctcatctactttcactttcttctgtaccctttgcaagggtaaggcactatatatatcgacctttttttgtaag |
11156760 |
T |
|
| Q |
230 |
agtgaaaaaatacataca--ctagtttatgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttatactttc |
327 |
Q |
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| T |
11156759 |
attgaaaaaatacaaacactctagtttgtgggggtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttatactttc |
11156660 |
T |
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| Q |
328 |
tttt |
331 |
Q |
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|||| |
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| T |
11156659 |
tttt |
11156656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 11163917 - 11163786
Alignment:
| Q |
30 |
atcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtgaatagaaga |
129 |
Q |
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| T |
11163917 |
atcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtgaatagaaga |
11163818 |
T |
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| Q |
130 |
ggggaaagctttgtgtttttccgaatcctcat |
161 |
Q |
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| T |
11163817 |
ggggaaagtttagcgtttttacgaatcctcat |
11163786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 11175039 - 11174968
Alignment:
| Q |
261 |
gtaggtgtgggtaaacaataaaaagagtaagataattgaaagcacatgaaccttattttatactttcttttc |
332 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
11175039 |
gtaggtgtgggtaaacactaaaaagattaagataattgaaagcacataaaccttattttatgctttcttttc |
11174968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 11176739 - 11176672
Alignment:
| Q |
30 |
atcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
97 |
Q |
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||||||||||||||||||||| |||||||| || | ||||||| |||||| || |||||||||||||| |
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| T |
11176739 |
atcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 4703900 - 4704031
Alignment:
| Q |
30 |
atcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtgaatagaaga |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||| |||||| | |||||| |||||||||| ||||||| |||||||||||||||||| |
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| T |
4703900 |
atcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaagtgaatagaaga |
4703999 |
T |
|
| Q |
130 |
ggggaaagctttgtgtttttccgaatcctcat |
161 |
Q |
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||||||| ||| | | ||| ||||||||||| |
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| T |
4704000 |
ggggaaatcttcgcggcttttcgaatcctcat |
4704031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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