View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_6 (Length: 682)

Name: NF0547_low_6
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_6
NF0547_low_6
[»] chr6 (1 HSPs)
chr6 (11-653)||(6011631-6012273)


Alignment Details
Target: chr6 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 11 - 653
Target Start/End: Complemental strand, 6012273 - 6011631
Alignment:
Q  11 cacagagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012273 cacagagcaatagcgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaa 6012174  T
Q  111 attaccttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012173 attaccttgctatgttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaac 6012074  T
Q  211 ccatgtctagtaggcgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacg 310  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6012073 ccatgtctagtagacgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacg 6011974  T
Q  311 cctatcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaata 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011973 cctatcaaattcttcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaata 6011874  T
Q  411 agccaatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011873 agccaatttccagctggagcaatgacctcctcaacataaggcaatcctggagcagttgttccccaggttctagctattctttcttctttgttatgcttgt 6011774  T
Q  511 agatttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaaggaaaactcagagacaccatgacaggagtttacttaaatagtcataac 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6011773 agatttcaatgctgcaaagaagttaaattaatgttcattggttaatgaaaaatgaaaactcagagacaccatgacaggagtttacttaaatagtcataac 6011674  T
Q  611 cattgtaattcaaaaattgaacgtgctaaaaaatggacggttc 653  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  6011673 cattgtaattcaaaaattgaacgtgctaaaatatggacagttc 6011631  T

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