View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_60 (Length: 362)
Name: NF0547_low_60
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_60 |
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| [»] scaffold0775 (2 HSPs) |
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Alignment Details
Target: scaffold0775 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 350 - 502
Alignment:
| Q |
171 |
gtctatctcatgtctcaacattaaaactaaaaacaagtcctacacatcaactagtcctacttc---tcctagtcctgctgctgccttccggtcaaaacgg |
267 |
Q |
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| T |
350 |
gtctatctcatgtctcaacattaaaactaaaaacaagtcctacacatcaactagtcctacttcttctcctagtcctgctgctgccttccggtcaaaacgg |
449 |
T |
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| Q |
268 |
gtgccaacctctccctaacatcgcgcaaggcctgatacaattgctctgtgctc |
320 |
Q |
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| T |
450 |
gtgccaacctctccctaacatcgcgcaaggcctgatacaactgctctgtgctc |
502 |
T |
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Target: scaffold0775; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 246 - 296
Alignment:
| Q |
67 |
ataaatattagattcaaccgatacattttctcttaaagttaccacatgcgt |
117 |
Q |
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| T |
246 |
ataaatattagattcaaccgatacattatctcttaaagttaccacatgcgt |
296 |
T |
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