View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_62 (Length: 360)

Name: NF0547_low_62
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_62
NF0547_low_62
[»] chr2 (14 HSPs)
chr2 (8-332)||(39493225-39493549)
chr2 (8-232)||(39144668-39144892)
chr2 (8-212)||(39425439-39425643)
chr2 (53-213)||(39188659-39188819)
chr2 (13-127)||(39604393-39604507)
chr2 (39-151)||(39099690-39099802)
chr2 (8-188)||(39380424-39380604)
chr2 (69-184)||(2362812-2362927)
chr2 (53-187)||(39371234-39371368)
chr2 (53-188)||(44895037-44895172)
chr2 (54-188)||(39472694-39472828)
chr2 (53-89)||(31606536-31606572)
chr2 (8-188)||(39153131-39153311)
chr2 (8-188)||(39216729-39216909)
[»] chr4 (1 HSPs)
chr4 (53-151)||(33152229-33152327)
[»] chr3 (1 HSPs)
chr3 (13-172)||(51576062-51576221)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 39493549 - 39493225
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493549 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 39493450  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39493449 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagataaaatatcaggcaaga 39493350  T
Q  208 tatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaattgaactgatatgttggcttcatacacttgatgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493349 tatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaattgaactgatatgttggcttcatacacttgatgc 39493250  T
Q  308 aaaatttaacatgttggttaattct 332  Q
    |||||||||||||||||||||||||    
T  39493249 aaaatttaacatgttggttaattct 39493225  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 39144668 - 39144892
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    |||| ||||||| || |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||    
T  39144668 tgatttgaaagccaatataagtcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggtccatctttcaat 39144767  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaaga 207  Q
    || ||||| ||||||||||| ||||||||||||||||||||| |||| | ||| ||||||||||||||| |||| |||||| | |||||||| || ||||    
T  39144768 gaagatgatgttttaaagctttttggacttgtttctcagcacgacatagctgtagagctgtttggggccttgggatttgcaaataaaatatctggtaaga 39144867  T
Q  208 tatctataatttgccttatttttct 232  Q
    ||||||  || |||||| |||||||    
T  39144868 tatctaatatctgccttgtttttct 39144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 39425643 - 39425439
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    |||| ||||||||||||||||||||||||  ||||||||||  || ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||     
T  39425643 tgatttgaaagctaacataagtcaaaacaatgaaaattcagcggctgttcttggttttctacttcttctgtcaatttatggactggttccttctttcgac 39425544  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaaga 207  Q
    || || || ||||| ||||| || | ||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39425543 gaagaagaagttttgaagcttttcgaacttgtttctcagcacaacttagctgtagagctgtttggggccatgggttttgcagataaaatatcaggcaaga 39425444  T
Q  208 tatct 212  Q
    |||||    
T  39425443 tatct 39425439  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 39188819 - 39188659
Alignment:
Q  53 ggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaac 152  Q
    |||||| ||||||||||||||||| |||||||||||  ||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||||| || ||    
T  39188819 ggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttggacttgtttctcagtacgac 39188720  T
Q  153 attgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaagatatcta 213  Q
    || |  || ||||| ||||||||| | ||||||||||| |||||||| || ||||||||||    
T  39188719 ataggcgtagagctatttggggccttaggttttgcagataaaatatctggtaagatatcta 39188659  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 39604393 - 39604507
Alignment:
Q  13 tgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgagga 112  Q
    ||||| ||||||||||| |||| || |||||||  || || ||||| ||||||||||||||| |||||||||||||| ||| ||| ||||||||||| ||    
T  39604393 tgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggctccttctttcgatgaaga 39604492  T
Q  113 tgaggttttaaagct 127  Q
    ||| |||||||||||    
T  39604493 tgaagttttaaagct 39604507  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 39099690 - 39099802
Alignment:
Q  39 gaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttg 138  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||  | ||| ||| ||||| ||||| ||||| ||||||||||| |||||  |||    
T  39099690 gaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttg 39099789  T
Q  139 tttctcagcacaa 151  Q
     | ||||||||||    
T  39099790 ctgctcagcacaa 39099802  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 39380604 - 39380424
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    |||| |||||||| |||||||  | || || ||| |||| || |||||||| || |||||||| ||| |||||||||||||| || || | |||||||||    
T  39380604 tgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgat 39380505  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgca 188  Q
    || |||||  ||||  |||| |||| | | ||| |||||||||| || | | ||||| ||||| ||||| |||||||||||    
T  39380504 gaagatgaaattttggagctttttgcattggttgctcagcacaagatagctatggagatgtttcgggccctgggttttgca 39380424  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 2362812 - 2362927
Alignment:
Q  69 ctccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgt 168  Q
    ||||||||||||||||||||| ||||| | ||||||||||| |||||  |||||||||| |||||  ||| | |||| ||||| ||   ||| |||||||    
T  2362812 ctccttctgtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgt 2362911  T
Q  169 ttggggccatgggttt 184  Q
    ||||| | ||||||||    
T  2362912 ttgggactatgggttt 2362927  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 39371234 - 39371368
Alignment:
Q  53 ggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaac 152  Q
    |||||| ||||||||| | ||| |||||| ||||||| ||||| | ||||| ||||| |||||  ||||  |||| |||| | ||||| || |||||||     
T  39371234 ggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgttgctgagcacaag 39371333  T
Q  153 attgttgtggagctgtttggggccatgggttttgc 187  Q
    || | | |||||||||||||  |||||||||||||    
T  39371334 atagctatggagctgtttggaaccatgggttttgc 39371368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 44895172 - 44895037
Alignment:
Q  53 ggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaac 152  Q
    |||||| ||||||||||| ||| |||||||||||||| || || | ||||||||||| |  || |||||  |||| |||| | ||||| ||||||||||     
T  44895172 ggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaaggcgaagttttggagctttttgcatttgttgctcagcacaag 44895073  T
Q  153 attgttgtggagctgtttggggccatgggttttgca 188  Q
    || | |||||| || ||| || || | |||||||||    
T  44895072 atagctgtggaactttttcggaccctcggttttgca 44895037  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 39472828 - 39472694
Alignment:
Q  54 gttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaaca 153  Q
    ||||| ||||||||||| ||| |||||||||||| | || || | ||||| ||||| ||||| || ||  |||| || | | ||||| |||||||||| |    
T  39472828 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 39472729  T
Q  154 ttgttgtggagctgtttggggccatgggttttgca 188  Q
    | | |||||| |||||| || || |||||||||||    
T  39472728 tagctgtggaactgtttcggaccttgggttttgca 39472694  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 31606572 - 31606536
Alignment:
Q  53 ggttctaggttttctactccttctgtcaatttatgga 89  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31606572 ggttcttggttttctactccttccgtcaatttatgga 31606536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 39153131 - 39153311
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    |||| |||||||||| ||||   |||| || ||||||||  | | |||||| |||||||||||  || |||| ||||||||| ||||| | |||||||||    
T  39153131 tgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgat 39153230  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgca 188  Q
     | ||||| || ||  |||| |||| | ||||| |||| ||||| | || |||||| || ||| || || |||||||||||    
T  39153231 aaagatgaagtcttggagctttttgcatttgttgctcaacacaagactgctgtggaactatttcggaccctgggttttgca 39153311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 39216729 - 39216909
Alignment:
Q  8 tgatatgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgat 107  Q
    |||| ||||| ||||||| ||| |||| ||  |||||||  | | |||||| |||||||| || ||| |||||||||||||| ||||| | ||||| | |    
T  39216729 tgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggt 39216828  T
Q  108 gaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgca 188  Q
    || ||||| |||||  |||| |||| |  |||| |||||||||| || | | | || ||||||| | || |||||||||||    
T  39216829 gaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgca 39216909  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 33152229 - 33152327
Alignment:
Q  53 ggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaa 151  Q
    |||||| |||||||| || |||||||||||||||||  ||||| ||||||| ||||| ||||| ||||||||||| |||||| | ||| |||| |||||    
T  33152229 ggttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaa 33152327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 51576062 - 51576221
Alignment:
Q  13 tgaaagctaacataagtcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgagga 112  Q
    |||||||  |||| ||| |||| || |||||||| || | |||||| |||| ||| ||||||||||||||||||||| ||||||| | ||| ||| | ||    
T  51576062 tgaaagcgtacattagtgaaaatactgaaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaaga 51576161  T
Q  113 tgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttgg 172  Q
    |||  |||| |||   |||||| ||||| |||||||||| || |  || |||||||||||    
T  51576162 tgaaattttgaagtattttggatttgttgctcagcacaaaatagcagtagagctgtttgg 51576221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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