View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_66 (Length: 355)
Name: NF0547_low_66
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 42 - 343
Target Start/End: Original strand, 47619518 - 47619819
Alignment:
| Q |
42 |
cttccaagaatcagaatcaacaatgctaccagtaggactcgcaatagatgaagatgaacggctgtgagtagtgcgatgagttgtaggtgtagataccgga |
141 |
Q |
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| T |
47619518 |
cttccaagaatcagaatcaacaatgctaccagtaggactcgcaatagatgaagatgaacggctgtgagtagtgcgatgagttgtaggtgtagataccgga |
47619617 |
T |
|
| Q |
142 |
cttggagacaggttccggttaacggcaaaatatagatcaagagccggtaatgtattgcaaagcttttgtccatcttcctcattaaatccaaatcctaatt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47619618 |
cttggagacaggttccggttaacggcaaaatatagatcaagagccggtaatgtattgcaaagcttttgtccatcttcctcattaaatccaaatcctaatt |
47619717 |
T |
|
| Q |
242 |
caatacatcctctaagctcatttagatcttcgtcgttgcaatcgtgcatgctattcctcctacgttgagtttgtcgacgccttctttcccacgccatgtc |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47619718 |
caatacatcctctaagctcatttagatcttcgtcgttgcaatcgtgcatgctattcctcctacgttgagtttgtcgacgccttctttcccacgccatgtc |
47619817 |
T |
|
| Q |
342 |
tc |
343 |
Q |
| |
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|| |
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| T |
47619818 |
tc |
47619819 |
T |
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