View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_67 (Length: 352)
Name: NF0547_low_67
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 29 - 341
Target Start/End: Original strand, 44773759 - 44774070
Alignment:
| Q |
29 |
aggactaatcctgtaaatgaacgttccacgaattaatcacattctcaaacagtacatttgaaccctggctacccaaaatatacaacactatatacaagtg |
128 |
Q |
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| T |
44773759 |
aggactaatcctgtaaatgagcgttccacgaattaatcacattctcaaacagtacatttgacccctggctacccaaaatatacaacactatatacaagtg |
44773858 |
T |
|
| Q |
129 |
tagatctcaatgcatattttctttgcacccactatagtggggaaaaacaaataatttaaacaatttaaagtagtttggtacaaggtagcaggtaacagtg |
228 |
Q |
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| T |
44773859 |
tagatctcaatgcatattttctttgcacccactatagtggggaaaaaaaaaaaatt-aaacaatttaaagtagtttggtacaaggtagcaggtaacagtg |
44773957 |
T |
|
| Q |
229 |
atgtgaccctagcaactccatgaaatgaacaaccttctaaaaagttttacttctgaatcagcccttgataatttacttccgatgccttctcttttgatca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44773958 |
atgtgaccctagcaactccatgaaatgaacaaccttctaaaaagttttacttctgaatcagcccttcataatttacttccgatgccttctcttttgatca |
44774057 |
T |
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| Q |
329 |
gctctttgtctct |
341 |
Q |
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| T |
44774058 |
gctctttgtctct |
44774070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 339
Target Start/End: Original strand, 48414107 - 48414383
Alignment:
| Q |
57 |
cgaattaatcacattctcaaacagtacatttgaaccctggctacccaaaatatacaacactatatacaagtgtagatctcaatgcatatttt--ctttgc |
154 |
Q |
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||||||||||||||| ||||| ||||| ||||| | | ||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||| |
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| T |
48414107 |
cgaattaatcacattgtcaaagagtacgtttgatcatttactacccaaaatatacaaaactatatacaagtgtacatctcaattcatatttttgttttgc |
48414206 |
T |
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| Q |
155 |
a-cccactatagtggggaaaaacaaataatttaaacaatttaaagtagtttggtacaaggtagcaggtaacagtgatgtgaccctagcaactccatgaaa |
253 |
Q |
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| T |
48414207 |
accccactttagtgaaaggaaagaaaaaaaaaaaacaatttaaagaattt-----aaaggtagtagataatagtgatgtgaccctagcacctccatg-aa |
48414300 |
T |
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| Q |
254 |
tgaacaaccttctaaaaagttttacttctgaatcagcccttgataatttacttccgatgccttctcttttgatcagctctttgtct |
339 |
Q |
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|||| ||||||| |||||||||||||| ||||| || || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48414301 |
tgaaaaaccttccaaaaagttttacttgcaaatcacacc---attatttacttccgatgccttcgcttttgatcagctctttgtct |
48414383 |
T |
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