View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_70 (Length: 346)

Name: NF0547_low_70
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_70
NF0547_low_70
[»] chr3 (8 HSPs)
chr3 (133-333)||(24982044-24982244)
chr3 (130-333)||(24497240-24497443)
chr3 (134-333)||(25085036-25085235)
chr3 (101-333)||(24923415-24923644)
chr3 (126-333)||(31825534-31825741)
chr3 (101-333)||(24919839-24920070)
chr3 (134-333)||(21584582-21584781)
chr3 (134-171)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (137-333)||(10575385-10575581)
chr7 (142-328)||(39954838-39955024)
chr7 (189-333)||(354402-354547)
chr7 (225-333)||(10580785-10580893)
[»] chr8 (1 HSPs)
chr8 (134-333)||(14261017-14261216)
[»] chr2 (1 HSPs)
chr2 (165-307)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (159-313)||(22898571-22898725)
chr4 (159-313)||(22950239-22950393)
chr4 (142-328)||(53328717-53328903)
[»] chr5 (1 HSPs)
chr5 (150-313)||(26358549-26358712)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 133 - 333
Target Start/End: Complemental strand, 24982244 - 24982044
Alignment:
Q  133 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  233 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  333 c 333  Q
    |    
T  24982044 c 24982044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 130 - 333
Target Start/End: Original strand, 24497240 - 24497443
Alignment:
Q  130 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc 229  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  230 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 329  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  330 cttc 333  Q
    ||||    
T  24497440 cttc 24497443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 134 - 333
Target Start/End: Complemental strand, 25085235 - 25085036
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  25085235 tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 25085136  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085135 tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 101 - 333
Target Start/End: Original strand, 24923415 - 24923644
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    ||||||||||||||||||| |||| |||| | ||||||   |||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24923415 aaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatg 24923511  T
Q  201 gcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    || || || ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923512 gctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcataga 24923611  T
Q  301 tcaaaccactgattctcttaacaccacctcttc 333  Q
    |||||||||||||||||||||||||||||||||    
T  24923612 tcaaaccactgattctcttaacaccacctcttc 24923644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 126 - 333
Target Start/End: Original strand, 31825534 - 31825741
Alignment:
Q  126 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgt 225  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  226 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 325  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  326 acctcttc 333  Q
    ||||||||    
T  31825734 acctcttc 31825741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 101 - 333
Target Start/End: Original strand, 24919839 - 24920070
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    |||||||||||||| ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  24919839 aaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatg 24919937  T
Q  201 gcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    || || || ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24919938 gctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcataga 24920037  T
Q  301 tcaaaccactgattctcttaacaccacctcttc 333  Q
    ||||||| ||||||||||| |||||||||||||    
T  24920038 tcaaaccgctgattctcttcacaccacctcttc 24920070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 134 - 333
Target Start/End: Original strand, 21584582 - 21584781
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttcctt 171  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 137 - 333
Target Start/End: Complemental strand, 10575581 - 10575385
Alignment:
Q  137 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  237 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttc 10575385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 328  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 333
Target Start/End: Complemental strand, 354547 - 354402
Alignment:
Q  189 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 288  Q
    ||||||||||| || || | |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  289 tttcttcataga-tcaaaccactgattctcttaacaccacctcttc 333  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttc 354402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 10580893 - 10580785
Alignment:
Q  225 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 324  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  325 cacctcttc 333  Q
    || ||||||    
T  10580793 caactcttc 10580785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 333
Target Start/End: Original strand, 14261017 - 14261216
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  165 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 264  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  265 agaagatcttcaagacacctctggtttcttcatagatcaaacc 307  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 313  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 313  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 328  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 313
Target Start/End: Original strand, 26358549 - 26358712
Alignment:
Q  150 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 249  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  250 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 313  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| |||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

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