View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_72 (Length: 336)
Name: NF0547_low_72
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 103 - 326
Target Start/End: Original strand, 31870235 - 31870458
Alignment:
| Q |
103 |
cccacaccacaaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtc |
202 |
Q |
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| T |
31870235 |
cccacaccacaaaatccctttaaccaattgaccagaaccggccgcgatcagcttcgccgcggttccactataatcctccacattaggagccaatgtagtc |
31870334 |
T |
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| Q |
203 |
caataagcagcacatctctcctccatcaattccttcttctccttcacattatccaaatccgccggcgatatctccatcgccaatgaaccatctaaagctt |
302 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31870335 |
caataggcagcacatctctcctccatcaattccttcttctccttcacattatccaaatccgcgggcgatatctccatcgccaatgaaccatctaaagctt |
31870434 |
T |
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| Q |
303 |
cccctttcttcttggccttctctg |
326 |
Q |
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|||||||||||||||||||||||| |
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| T |
31870435 |
cccctttcttcttggccttctctg |
31870458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 8851574 - 8851494
Alignment:
| Q |
167 |
ccactataatcctccacattaggagccaatgtagtccaataagcagcacatctctcctccatcaattccttcttctccttc |
247 |
Q |
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| T |
8851574 |
ccactatactcctccacattcggtgccaatgtagtccaatacgccgcacattgcccctccatcatctccttcttcttcttc |
8851494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 27878417 - 27878466
Alignment:
| Q |
165 |
ttccactataatcctccacattaggagccaatgtagtccaataagcagca |
214 |
Q |
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| T |
27878417 |
ttccactataatcctccacgtttggtgccaacgttgtccaataagcagca |
27878466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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