View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_74 (Length: 333)
Name: NF0547_low_74
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_74 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 30654397 - 30654085
Alignment:
| Q |
13 |
atacttggctggggttgcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcaaacaagctgaaagaag |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30654397 |
atacttggctggggtggcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcagacaagctgaaagaag |
30654298 |
T |
|
| Q |
113 |
aggagacttgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcatggcagaagatcga |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
30654297 |
gggagacttgcatgacatacgaatatgcactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcagggcggaagatcga |
30654198 |
T |
|
| Q |
213 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
30654197 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgtaggctattagcttacccaag-tttgaag-------tagcaatcgtgtg |
30654106 |
T |
|
| Q |
313 |
gaagcatcgcaaagagactcc |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30654105 |
gaagcatcgcaaagagactcc |
30654085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 14859231 - 14859164
Alignment:
| Q |
218 |
tcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagt |
285 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
14859231 |
tcaagtgatgaataatattttaggaacctatgaagttacttttgggtaggctattagcttacccaagt |
14859164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 12716813 - 12716746
Alignment:
| Q |
121 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
188 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
12716813 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12716746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 12778044 - 12777977
Alignment:
| Q |
121 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
188 |
Q |
| |
|
||||||||||| ||||||||| |||| || ||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
12778044 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12777977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 48028076 - 48028040
Alignment:
| Q |
154 |
ttatatctcacctattatttgcaaatgattgtttcct |
190 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48028076 |
ttatatctcacctattatttgctgatgattgtttcct |
48028040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 334 times since January 2019
Visitors: 3649