View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_8 (Length: 623)

Name: NF0547_low_8
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_8
NF0547_low_8
[»] chr7 (12 HSPs)
chr7 (95-612)||(42848491-42849007)
chr7 (95-261)||(42855036-42855201)
chr7 (437-610)||(42855475-42855648)
chr7 (113-389)||(42853163-42853435)
chr7 (95-228)||(42860751-42860884)
chr7 (453-533)||(42857084-42857164)
chr7 (95-228)||(42856674-42856807)
chr7 (205-261)||(42855191-42855247)
chr7 (570-613)||(42857184-42857227)
chr7 (301-378)||(42856910-42856986)
chr7 (301-378)||(42860987-42861063)
chr7 (559-603)||(42861513-42861557)
[»] chr4 (1 HSPs)
chr4 (95-173)||(27272-27350)


Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 95 - 612
Target Start/End: Original strand, 42848491 - 42849007
Alignment:
Q  95 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42848491 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggcatgttaaaagcttctctcactatggttttt 42848590  T
Q  195 tcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactactcaagatttatgatactagaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42848591 tcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactactcaagatttatgataatagaa 42848690  T
Q  295 gtaaatttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagagtcatttaactagtagc 394  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42848691 gtaaatttcaaagactattattctgtttgatgattttttcgactcatattttaggaggactacatgaatttggatacaccggagtcatttaactagtagc 42848790  T
Q  395 tatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacgcatttactctattttctgtttctgcatatttttaactttcctatttggtga 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42848791 tatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacacatttactctattttctgtttctgcatatttttgactttcctatttggtga 42848890  T
Q  495 gtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataacttgattaggcttataattctttcccttctttactaggaattgtc 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42848891 gtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataactt-attaggcttataattctttcccttctttactaggaattgtc 42848989  T
Q  595 aattcattgcgtgtctct 612  Q
    ||||||||||||||||||    
T  42848990 aattcattgcgtgtctct 42849007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 42855036 - 42855201
Alignment:
Q  95 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttt 194  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  42855036 gcatcagcagccaattaatgaaatgcagaaaaggaggattaagaatctttcaaaacacttggaggagggcatgttaaaagcttctctcactatggttttt 42855135  T
Q  195 tcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaatttt 261  Q
    ||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||    
T  42855136 tctggatctcattttcatttt-ttttcactattgggagggatttaagtcttctttaattttaatttt 42855201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 437 - 610
Target Start/End: Original strand, 42855475 - 42855648
Alignment:
Q  437 tgtaacgcatttactct-attttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcatt 535  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  42855475 tgtaacgcatt-actcttattttctgtttctgcatatttttcactctcccattaggtgaatttcaggccattgctgttgtgaaacctctattcttgcatt 42855573  T
Q  536 ctctatggatataacttgattaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtct 610  Q
    | | |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42855574 ccccaaagatataacttgattaggcttataactctttcccttctttactaggaattgtcaattcattgcgtgtct 42855648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 42853163 - 42853435
Alignment:
Q  113 tgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcat 212  Q
    ||||||||||| ||||||||| ||||||||||||||| || ||||||||||  ||||||||| ||||||| ||| |||||||||| |||| ||| || ||    
T  42853163 tgaaatgcagaaaaggaggatcaaggatctttcaaaatgcctggaggagggcctgttaaaagattctctctctaaggttttttctggatcccatgttaat 42853262  T
Q  213 tttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactactcaagatttatgatactagaagtaaatttcaaagactat 312  Q
    ||||||||||||||||||||| ||| || |||||||||||           |||||| |||||||||| |||||| |||||||||||||||||||||||     
T  42853263 tttcttttcactattgggagggatttaaatcttccttaat-----------ttttaaatactcaagatgtatgattctagaagtaaatttcaaagacta- 42853350  T
Q  313 tattctgt------ttgacgattttttcgactcatattttaggaggactacatgaatttggatacac--cagagtcatttaacta 389  Q
    ||||||||      ||||| || |||| ||||| | |||||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  42853351 tattctgttgagtgttgacaatgttttggactcgtcttttaggaggactacatgaacttggatacactacagagtcgtttaacta 42853435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 42860751 - 42860884
Alignment:
Q  95 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttt 194  Q
    |||||||||||||| || ||||||||||| | |||||||||  ||||||||||||||| |||| |||||  |||| |||||| ||||||| | |||||||    
T  42860751 gcatcaacagccaattactgaaatgcagaaagggaggattacagatctttcaaaacgcctggacgagggcctgttcaaagctgctctcacgaaggttttt 42860850  T
Q  195 tcttgatctcattttcattttcttttcactattg 228  Q
    ||| ||||||||||  ||||||||||||||||||    
T  42860851 tctggatctcatttcaattttcttttcactattg 42860884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 42857084 - 42857164
Alignment:
Q  453 tattttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgca 533  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42857084 tattttctgtttctgcatatttttcactctcccatttggtgaatttcaggccattgctgttgtgaaacctctattcttgca 42857164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 42856674 - 42856807
Alignment:
Q  95 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttt 194  Q
    |||||||||||||| || ||||||||||| | ||| |||||  ||||||||||||||| |||| |||||  |||| |||||| ||||||| | |||||||    
T  42856674 gcatcaacagccaattactgaaatgcagaaagggaagattacagatctttcaaaacgcctggatgagggcctgttcaaagctgctctcacgaaggttttt 42856773  T
Q  195 tcttgatctcattttcattttcttttcactattg 228  Q
    ||| ||||||||||  ||||||||||||||||||    
T  42856774 tctggatctcatttcaattttcttttcactattg 42856807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 42855191 - 42855247
Alignment:
Q  205 attttcattttcttttcactattgggaggtattcaagtcttccttaattttaatttt 261  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  42855191 attttaattttcttttcactattgggagggatttaagtcttccttaatttaaatttt 42855247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 42857184 - 42857227
Alignment:
Q  570 tttcccttctttactaggaattgtcaattcattgcgtgtctctg 613  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  42857184 tttcccttctttactaggaattgtcaattcattgcgagtctctg 42857227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 42856910 - 42856986
Alignment:
Q  301 ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag 378  Q
    |||||||||| ||||| |||| ||| || |||||||||  | |||||||| ||||||||||| |||||||||| ||||    
T  42856910 ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag 42856986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 42860987 - 42861063
Alignment:
Q  301 ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag 378  Q
    |||||||||| ||||| |||| ||| || |||||||||  | |||||||| ||||||||||| |||||||||| ||||    
T  42860987 ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag 42861063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 603
Target Start/End: Original strand, 42861513 - 42861557
Alignment:
Q  559 gcttataattctttcccttctttactaggaattgtcaattcattg 603  Q
    |||||||| | |||||||||||||||||||| || ||||||||||    
T  42861513 gcttataactatttcccttctttactaggaactgacaattcattg 42861557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 27272 - 27350
Alignment:
Q  95 gcatcaacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaa 173  Q
    |||||| ||||||| || |||||| || | ||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  27272 gcatcagcagccaattagtgaaattcaaaaaaggaggattaaggatcttgcaaaacgcctggaggagggcatgttaaaa 27350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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