View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_82 (Length: 313)
Name: NF0547_low_82
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 52 - 254
Target Start/End: Original strand, 41230362 - 41230564
Alignment:
| Q |
52 |
aagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctata |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230362 |
aagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctata |
41230461 |
T |
|
| Q |
152 |
ccagaggaaatccaccacaacaaactacaagcgtagaaacaaagaaatcaatctatatctataaccaaagcactactaatgcagtaaagtaaaatcagtt |
251 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41230462 |
ccagaggaaatccaccacaacaaactacaagggtagaaacaaagaaatcaatatatatctataaccaaagcactactaatgcagtaaagtaaaatcagtt |
41230561 |
T |
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| Q |
252 |
cat |
254 |
Q |
| |
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||| |
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|
| T |
41230562 |
cat |
41230564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 37382246 - 37382049
Alignment:
| Q |
52 |
aagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctata |
151 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| | |||||| || |||||| | |||||||||||||| |
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| T |
37382246 |
aagaaggccaccttcctggatcaggaaccatccttccccatttatcaatcacgtcgaatccaagggaatcactataagcacccgggactttcttcctata |
37382147 |
T |
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| Q |
152 |
ccagaggaaatccaccacaacaaactacaag--------cgtagaaacaaagaaatcaatctatatctataaccaaagcactactaatgcagtaaagt |
241 |
Q |
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| T |
37382146 |
ccagaggtaatccaccacaacatactacaagggtagaacagtagaagcaaataaatcaatctatatatataaccaaagtactactaatgcagtaaagt |
37382049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 37360080 - 37359913
Alignment:
| Q |
54 |
gaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctatacc |
153 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||| |||||| | || |||||| | |||||||||||||||| |
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| T |
37360080 |
gaaggccaccttactggatcaggggccatccttccccattgatcgatcacgtcgaatccaagagaattactatgagcacccgggactttcttcctatacc |
37359981 |
T |
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| Q |
154 |
agaggaaatccaccacaacaaactacaagcgtagaaacaaagaaatcaatctatatctataaccaaag |
221 |
Q |
| |
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||||| |||| || |||||| ||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
37359980 |
agaggtaatcgacgacaacatactacaaatgtagaaacaaataaatcaatctatatctataacaaaag |
37359913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 37367984 - 37368151
Alignment:
| Q |
54 |
gaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctatacc |
153 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||| |||||| | || |||||| | |||||||||||||||| |
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| T |
37367984 |
gaaggccaccttactggatcaggggccatccttccccattgatcgatcacgtcgaatccaagagaattactatgagcacccgggactttcttcctatacc |
37368083 |
T |
|
| Q |
154 |
agaggaaatccaccacaacaaactacaagcgtagaaacaaagaaatcaatctatatctataaccaaag |
221 |
Q |
| |
|
||||| |||| || |||||| ||||||| ||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
37368084 |
agaggtaatcgacgacaacatactacaaatgtagaaacaaataaatcaatctatatctataacaaaag |
37368151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 37374904 - 37374709
Alignment:
| Q |
52 |
aagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctata |
151 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |||||| | ||||||||| | || ||||||||||| |
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|
| T |
37374904 |
aagaaggccacctgactggatcagggaccatccttccccattgatcaatcacgtcgaatccaagagaattcatattagcacccgggacattcttcctata |
37374805 |
T |
|
| Q |
152 |
ccagaggaaatccaccacaacaaactacaagcgtagaaacaaagaaatc---aatctatatctataaccaaagcactactaatgcagtaaagtaaaa |
245 |
Q |
| |
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||||||| |||| || |||||| ||||||| |||||||||| ||| || ||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
37374804 |
ccagaggtaatcgacgacaacatactacaaaggtagaaacaaggaattcaataatctatatctataaccaatttacta-tgatgcagtaaagtaaaa |
37374709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 39243408 - 39243278
Alignment:
| Q |
52 |
aagaaggccaccttcctggatcagggaccatccttccccattcatcaatcacgtcaaatccacgagaatcaacattagcacctgcaactttcttcctata |
151 |
Q |
| |
|
|||||||||||||| |||| ||||| | |||||| ||||||||||||||||| || |||||| |||||||| || |||||| ||||||| | ||||| |
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| T |
39243408 |
aagaaggccacctttctgggtcaggaatcatcctcccccattcatcaatcacatcgaatccaagagaatcatgataagcaccctgaactttccttctata |
39243309 |
T |
|
| Q |
152 |
ccagaggaaatccaccacaacaaactacaag |
182 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |
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| T |
39243308 |
ccagagataatccaccacaacatactacaag |
39243278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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