View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_83 (Length: 311)

Name: NF0547_low_83
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_83
NF0547_low_83
[»] chr4 (1 HSPs)
chr4 (40-281)||(53687446-53687689)
[»] chr8 (1 HSPs)
chr8 (84-239)||(24994119-24994266)
[»] chr7 (1 HSPs)
chr7 (1-46)||(24766419-24766464)
[»] chr5 (1 HSPs)
chr5 (75-123)||(22817478-22817526)
[»] chr1 (4 HSPs)
chr1 (201-241)||(5770715-5770755)
chr1 (204-234)||(37708004-37708034)
chr1 (210-247)||(45886864-45886901)
chr1 (201-241)||(5766976-5767016)
[»] chr6 (2 HSPs)
chr6 (201-241)||(30746744-30746784)
chr6 (201-241)||(30747501-30747541)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 40 - 281
Target Start/End: Original strand, 53687446 - 53687689
Alignment:
Q  40 atatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagtat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53687446 atatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagtat 53687545  T
Q  140 gctattgctagctgctgtcaagaattgaactggcgtgagttaagtcacgtc-ggatttggtcatttcagttgggcgcgagtgttttgtgctgggtaaaga 238  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  53687546 gctattgctagctgcggccaagaattgaactggcgtgagttaagtcacgtcggggtttggtcatttcagttgggcgcgagtgttttgtgctgggtaaaga 53687645  T
Q  239 gcaagattcnnnnnnnaaaattgcataaaaat-ggtccaacttt 281  Q
    |||||||||       |||||||||||||||| |||||||||||    
T  53687646 gcaagattctttttctaaaattgcataaaaatgggtccaacttt 53687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 24994266 - 24994119
Alignment:
Q  84 tgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagtatgctattgctagctgctgtcaagaattgaactggcgtgagttaag 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||    
T  24994266 tgctggaggtaattttttgttctttttggcttcgacccttacctctcac------------ggctagctgctgtcaagaattgaactagcgtgagttaag 24994179  T
Q  184 tcacgtcggatt----tggtcatttcagttgggcgcgagtgttttgtgctgggtaaagag 239  Q
    ||| |||| | |    ||||||||||| |||| |||||||||||| || || ||||||||    
T  24994178 tcatgtcgaagtaaaatggtcatttcaattggacgcgagtgttttatgttgagtaaagag 24994119  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24766464 - 24766419
Alignment:
Q  1 aaataatacttatgaaacaaaagttgaaaaacttgcaacatatgaa 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24766464 aaataatacttatgaaacaaaagttgaaaaacttgcaacatatgaa 24766419  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 22817526 - 22817478
Alignment:
Q  75 tgctggtgctgctggaggtaattttttgttctttttggcttcgaccctt 123  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  22817526 tgctggtgctgctgctggtaattttttgttctttttggcttcgaccctt 22817478  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 5770715 - 5770755
Alignment:
Q  201 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 241  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  5770715 atttcagctgggtgcgagtgttttgtgctgggtaaagagca 5770755  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 37708034 - 37708004
Alignment:
Q  204 tcagttgggcgcgagtgttttgtgctgggta 234  Q
    |||||||||||||||||||||||||||||||    
T  37708034 tcagttgggcgcgagtgttttgtgctgggta 37708004  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 45886901 - 45886864
Alignment:
Q  210 gggcgcgagtgttttgtgctgggtaaagagcaagattc 247  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  45886901 gggcgcgagtgttttgtgctgggtgaagagcaaaattc 45886864  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 5766976 - 5767016
Alignment:
Q  201 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 241  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  5766976 atttcagttgagcgtgagtgttttgtactgggtaaagagca 5767016  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 30746784 - 30746744
Alignment:
Q  201 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 241  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  30746784 atttcaattgggcgcgagcgttttgtgttgggtaaagagca 30746744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 30747501 - 30747541
Alignment:
Q  201 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 241  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  30747501 atttcagttggtcgcgagcgttttgtgttgggtaaagagca 30747541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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