View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_87 (Length: 298)
Name: NF0547_low_87
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_87 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 35 - 269
Target Start/End: Complemental strand, 18663245 - 18663011
Alignment:
| Q |
35 |
ttggtctttgtcttacaagggaaatctacttctgcctcttgtaaattttagccaagaaggacttcaatatacttcttgaactgcattgctgggatgagtt |
134 |
Q |
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| T |
18663245 |
ttggtctttgtcttacaagggaaatctacttctgcctcttgtaaattttagccaagaaggacttcaatatacttcttgaacttctttgctgggatgagtt |
18663146 |
T |
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| Q |
135 |
tcaatggatgctacaagctttctcataacttgcactctcatgccccagaaatacaacctatacaatcacaattcgaataaatcagtcaaagaaaataaac |
234 |
Q |
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| T |
18663145 |
tcaatggaggctacaagctttctcataacttgcactctcataccccagaaatacaacctatacaatcacaattcgaataaatcagtcaaataaaataaac |
18663046 |
T |
|
| Q |
235 |
aacatcatgatatgtaaatatcttaatataatgtg |
269 |
Q |
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| T |
18663045 |
aacatcatgatatgtaaatatcttaatataatgtg |
18663011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 104 - 269
Target Start/End: Complemental strand, 18669639 - 18669474
Alignment:
| Q |
104 |
tacttcttgaactgcattgctgggatgagtttcaatggatgctacaagctttctcataacttgcactctcatgccccagaaatacaacctatacaatcac |
203 |
Q |
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| T |
18669639 |
tacttctgcaactgcattgctgggatgagtttcaacggaggctacaagctttctcataacttgcactctaatacccaagaaatacaccctatacaatcac |
18669540 |
T |
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| Q |
204 |
aattcgaataaatcagtcaaagaaaataaacaacatcatgatatgtaaatatcttaatataatgtg |
269 |
Q |
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| T |
18669539 |
aattcgaataaatcagtcaaaaaaaataaacaacatcatgatatgtaaatatcttaatataatgtg |
18669474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 18669665 - 18669631
Alignment:
| Q |
35 |
ttggtctttgtcttacaagggaaatctacttctgc |
69 |
Q |
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| T |
18669665 |
ttggtctttgtcttacaagggaaatctacttctgc |
18669631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 269
Target Start/End: Complemental strand, 9972632 - 9972409
Alignment:
| Q |
43 |
tgtcttacaagggaaatctacttctgcctcttgtaaattttagccaagaaggacttcaatatacttcttgaactgcattgctgggatgagtttcaatgga |
142 |
Q |
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| T |
9972632 |
tgtcttacaagggaaatttacttttgcctcttgtaaattttagccaagaaggatttcaata--ctgcttgaactgcattgctgggatgagcttcaataga |
9972535 |
T |
|
| Q |
143 |
tgctacaagctttctcataacttgcactctcatgccccagaaatacaacctatacaatcacaattcgaataaatcagtcaaagaaaataaacaacatcat |
242 |
Q |
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| ||||||||| |||||| || | |||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
9972534 |
ggttacaagctt-ctcatagctcgtactctcatactcctcaaatacaccctatacaatcacaattcgaataaatcagtcaaagaaaatcaacaacattat |
9972436 |
T |
|
| Q |
243 |
gatatgtaaatatcttaatataatgtg |
269 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
9972435 |
gatatgtaaatatcttaatacaatgtg |
9972409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 41490570 - 41490707
Alignment:
| Q |
35 |
ttggtctttgtcttacaagggaaatctacttctgcctcttgtaaattttagccaagaaggacttcaatatacttcttgaactgcattgctgggatgagtt |
134 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||| | |
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| T |
41490570 |
ttggtctttgtcttacaagggaaatctacgcttgtctcttgtaaattttagccaaaaaggacttca--atacttcttgaactgctttgttgggatgagct |
41490667 |
T |
|
| Q |
135 |
tcaatggatgctacaagctttctcataacttgcactctcat |
175 |
Q |
| |
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|||||||| | ||||||| ||||| ||| | |||||||||| |
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| T |
41490668 |
tcaatggaggttacaagc-ttctcgtaattcgcactctcat |
41490707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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