View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_90 (Length: 297)
Name: NF0547_low_90
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40870416 - 40870703
Alignment:
| Q |
1 |
aatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870416 |
aatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataat |
40870515 |
T |
|
| Q |
101 |
ttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatatattactcttctcaattttagatgagccaaatatgattcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870516 |
ttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatgtattactcttctcaattttagatgagccaaatatgattcta |
40870615 |
T |
|
| Q |
201 |
aatttgttaattgcgttctaaactctcgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
288 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870616 |
aatttgttaattgcgttctaaactcttgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagtctctgc |
40870703 |
T |
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