View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0547_low_92 (Length: 295)
Name: NF0547_low_92
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 27167519 - 27167317
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgagnnnnnnnnngtctctttttataaaacaatattcaaatttcaatgtac |
162 |
Q |
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| T |
27167519 |
tcttttaattaggtttattactatctccatcttcaattagaagacctcttgagtttttttt-gtccctttttataaaacaatattcaaatttcaatgtac |
27167421 |
T |
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| Q |
163 |
attaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaa-aaaatactccctccgtctctatatacaagcaccaatttgatgg |
261 |
Q |
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| T |
27167420 |
atcaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaaaaaaatactccttccgtctctatatacaagcaccaatttgatgg |
27167321 |
T |
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| Q |
262 |
atct |
265 |
Q |
| |
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|||| |
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| T |
27167320 |
atct |
27167317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 27170325 - 27170223
Alignment:
| Q |
155 |
caatgtacattaattactttatcactatacatgtatttatctaatgtttttgtgcgctatgtaaaaaatactccctccgtctctatatacaagcaccaat |
254 |
Q |
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| T |
27170325 |
caatgtgcattaattactttattactataaatgtatttatctaatatttttgtgtaatatataataactactccctccgtccttatatacaagcaccaat |
27170226 |
T |
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| Q |
255 |
ttg |
257 |
Q |
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||| |
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| T |
27170225 |
ttg |
27170223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 27213823 - 27213711
Alignment:
| Q |
137 |
aaaacaatattcaaatttcaatgtacattaattactttatcactatacatgtatttatct--aatgtttttgtgcgctatgtaaaaaatactccctccgt |
234 |
Q |
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||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||| | ||| ||||| ||| ||||||| || |||||||||||| |
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| T |
27213823 |
aaaaccatattcaaatatcaatgtgcattaattacttcatcactatacatgtatttatattaaatatttttatgcaatatgtaataactactccctccgt |
27213724 |
T |
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| Q |
235 |
ctctatatacaag |
247 |
Q |
| |
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| ||||||||||| |
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| T |
27213723 |
ccctatatacaag |
27213711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 27162662 - 27162785
Alignment:
| Q |
129 |
ctttttataaaacaatattcaaatttcaatgtacattaa-ttactttatcactatacatgtatttatct--aatgtttttgtgcgctatgtaaaaaatac |
225 |
Q |
| |
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||||||||||||| || |||||||||||||||| ||||| ||| |||||| |||||| | ||||||||| ||| ||||||||| ||||||| || ||| |
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| T |
27162662 |
ctttttataaaaccattttcaaatttcaatgtatattaatttaatttatcgctatacctatatttatcttaaatatttttgtgcaatatgtaataactac |
27162761 |
T |
|
| Q |
226 |
tccctccgtctctatatacaagca |
249 |
Q |
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| | ||||| |||||||||||| |
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| T |
27162762 |
tacaaccgtccatatatacaagca |
27162785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 27170404 - 27170352
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgag |
115 |
Q |
| |
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||||| |||||| ||||||||| |||| ||||||||||||||||||| ||||| |
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|
| T |
27170404 |
tctttcaattaggtttattactacctctatcttcaattagaagaccttttgag |
27170352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 27162595 - 27162647
Alignment:
| Q |
63 |
tcttttaattagatttattacttcctcaatcttcaattagaagacctcttgag |
115 |
Q |
| |
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||||| |||||| ||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
27162595 |
tctttcaattaggtttattactaccttcatcttcaattagaagaccttttgag |
27162647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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